Hb_003653_030

Information

Type -
Description -
Location Contig3653: 43534-44238
Sequence    

Annotation

kegg
ID rcu:RCOM_0042390
description nucleic acid binding protein, putative
nr
ID XP_002531176.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q84WI0
description Zinc finger protein GIS OS=Arabidopsis thaliana GN=GIS PE=2 SV=1
trembl
ID B9SYV7
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0042390 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger protein 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37623: 43268-44129
cDNA
(Sanger)
(ID:Location)		 034_A04.ab1: 43268-44129 , 041_O02.ab1: 43268-44066

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003653_030 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_004116_030 0.0459410391 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
3 Hb_032631_060 0.0553014894 - - Myosin heavy chain, putative [Ricinus communis]
4 Hb_000762_050 0.0589262169 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
5 Hb_001038_020 0.0605289726 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
6 Hb_001104_080 0.0621310744 - - peroxiredoxin, putative [Ricinus communis]
7 Hb_000003_530 0.0645463023 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
8 Hb_016334_010 0.0659437408 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
9 Hb_008725_280 0.0676475624 transcription factor TF Family: MYB hypothetical protein POPTR_0002s19920g [Populus trichocarpa]
10 Hb_002161_010 0.0686329086 - - PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like [Jatropha curcas]
11 Hb_004631_020 0.0697575269 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
12 Hb_009663_030 0.0706443897 - - Blue copper protein precursor, putative [Ricinus communis]
13 Hb_000825_010 0.0710221041 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
14 Hb_000923_030 0.072270116 - - F-box family protein [Populus trichocarpa]
15 Hb_001287_070 0.0732744151 - - latex plastidic aldolase-like protein [Hevea brasiliensis]
16 Hb_000245_090 0.0750723846 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
17 Hb_013818_020 0.0764973254 - - hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
18 Hb_004712_230 0.0765328114 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
19 Hb_011068_010 0.0769019373 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
20 Hb_000029_150 0.0774426208 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003653_030 Hb_003653_030 Hb_004116_030 Hb_004116_030 Hb_003653_030--Hb_004116_030 Hb_032631_060 Hb_032631_060 Hb_003653_030--Hb_032631_060 Hb_000762_050 Hb_000762_050 Hb_003653_030--Hb_000762_050 Hb_001038_020 Hb_001038_020 Hb_003653_030--Hb_001038_020 Hb_001104_080 Hb_001104_080 Hb_003653_030--Hb_001104_080 Hb_000003_530 Hb_000003_530 Hb_003653_030--Hb_000003_530 Hb_004116_030--Hb_000762_050 Hb_004116_030--Hb_000003_530 Hb_016334_010 Hb_016334_010 Hb_004116_030--Hb_016334_010 Hb_002161_010 Hb_002161_010 Hb_004116_030--Hb_002161_010 Hb_008725_280 Hb_008725_280 Hb_004116_030--Hb_008725_280 Hb_032631_060--Hb_001104_080 Hb_000010_380 Hb_000010_380 Hb_032631_060--Hb_000010_380 Hb_032631_060--Hb_004116_030 Hb_000805_080 Hb_000805_080 Hb_032631_060--Hb_000805_080 Hb_000923_030 Hb_000923_030 Hb_032631_060--Hb_000923_030 Hb_000762_050--Hb_000003_530 Hb_013818_020 Hb_013818_020 Hb_000762_050--Hb_013818_020 Hb_000762_050--Hb_016334_010 Hb_000762_050--Hb_002161_010 Hb_000282_110 Hb_000282_110 Hb_000762_050--Hb_000282_110 Hb_001038_020--Hb_008725_280 Hb_001038_020--Hb_002161_010 Hb_001038_020--Hb_000003_530 Hb_001038_020--Hb_000762_050 Hb_000245_090 Hb_000245_090 Hb_001038_020--Hb_000245_090 Hb_004611_010 Hb_004611_010 Hb_001038_020--Hb_004611_010 Hb_000825_010 Hb_000825_010 Hb_001104_080--Hb_000825_010 Hb_001104_080--Hb_000923_030 Hb_001104_080--Hb_000805_080 Hb_007559_020 Hb_007559_020 Hb_001104_080--Hb_007559_020 Hb_001104_080--Hb_000010_380 Hb_000003_530--Hb_002161_010 Hb_000003_530--Hb_008725_280 Hb_000003_530--Hb_016334_010 Hb_000003_530--Hb_000245_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.105639 4.77518 1.30609 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0801086 0 0 0 18.0763

CAGE analysis