Hb_003654_020

Information

Type transcription factor
Description TF Family: bHLH
Location Contig3654: 30750-32175
Sequence    

Annotation

kegg
ID rcu:RCOM_1510870
description DNA binding protein, putative
nr
ID XP_002511418.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RB43
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1510870 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003654_020 0.0 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
2 Hb_000186_180 0.0549248152 - - PREDICTED: uncharacterized protein LOC105649287 [Jatropha curcas]
3 Hb_003209_150 0.0840655055 - - CLE9, putative [Ricinus communis]
4 Hb_000732_300 0.0915188985 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
5 Hb_000031_320 0.0976447532 - - unnamed protein product [Vitis vinifera]
6 Hb_002307_120 0.09919621 - - scab resistance family protein [Populus trichocarpa]
7 Hb_002818_160 0.0996228497 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
8 Hb_002284_160 0.105779614 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
9 Hb_001677_170 0.1073126087 - - hypothetical protein M569_03661, partial [Genlisea aurea]
10 Hb_005337_140 0.1100152484 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase 1-like [Jatropha curcas]
11 Hb_001115_070 0.1126922127 - - RecName: Full=CASP-like protein 2C1; Short=PtCASPL2C1 [Populus trichocarpa]
12 Hb_001777_030 0.1206908834 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
13 Hb_004117_380 0.1213966401 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
14 Hb_000167_100 0.1230094961 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_003767_060 0.125516168 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
16 Hb_046739_010 0.1281008948 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
17 Hb_001369_340 0.1327481738 - - Peroxisomal membrane protein 11B [Theobroma cacao]
18 Hb_004017_030 0.1328794521 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
19 Hb_000815_090 0.1361398337 - - PREDICTED: uncharacterized protein LOC105630464 isoform X1 [Jatropha curcas]
20 Hb_003970_010 0.136351747 - - PREDICTED: sigma factor binding protein 1, chloroplastic-like [Populus euphratica]

Gene co-expression network

sample Hb_003654_020 Hb_003654_020 Hb_000186_180 Hb_000186_180 Hb_003654_020--Hb_000186_180 Hb_003209_150 Hb_003209_150 Hb_003654_020--Hb_003209_150 Hb_000732_300 Hb_000732_300 Hb_003654_020--Hb_000732_300 Hb_000031_320 Hb_000031_320 Hb_003654_020--Hb_000031_320 Hb_002307_120 Hb_002307_120 Hb_003654_020--Hb_002307_120 Hb_002818_160 Hb_002818_160 Hb_003654_020--Hb_002818_160 Hb_000186_180--Hb_002818_160 Hb_000186_180--Hb_000031_320 Hb_000167_100 Hb_000167_100 Hb_000186_180--Hb_000167_100 Hb_000186_180--Hb_002307_120 Hb_001677_170 Hb_001677_170 Hb_000186_180--Hb_001677_170 Hb_001369_340 Hb_001369_340 Hb_003209_150--Hb_001369_340 Hb_003767_060 Hb_003767_060 Hb_003209_150--Hb_003767_060 Hb_003209_150--Hb_002307_120 Hb_004117_380 Hb_004117_380 Hb_003209_150--Hb_004117_380 Hb_004017_030 Hb_004017_030 Hb_003209_150--Hb_004017_030 Hb_000732_300--Hb_004117_380 Hb_000732_300--Hb_003209_150 Hb_002284_160 Hb_002284_160 Hb_000732_300--Hb_002284_160 Hb_000413_190 Hb_000413_190 Hb_000732_300--Hb_000413_190 Hb_005890_010 Hb_005890_010 Hb_000732_300--Hb_005890_010 Hb_046739_010 Hb_046739_010 Hb_000031_320--Hb_046739_010 Hb_000031_320--Hb_001677_170 Hb_011028_030 Hb_011028_030 Hb_000031_320--Hb_011028_030 Hb_002407_090 Hb_002407_090 Hb_000031_320--Hb_002407_090 Hb_000031_320--Hb_002818_160 Hb_003970_010 Hb_003970_010 Hb_000031_320--Hb_003970_010 Hb_002307_120--Hb_002818_160 Hb_005337_140 Hb_005337_140 Hb_002307_120--Hb_005337_140 Hb_002307_120--Hb_003767_060 Hb_002818_160--Hb_003767_060 Hb_002818_160--Hb_003209_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.68189 7.27547 3.65282 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0550718 0 0 8.92908

CAGE analysis