Hb_003656_030

Information

Type -
Description -
Location Contig3656: 20632-22839
Sequence    

Annotation

kegg
ID rcu:RCOM_1045960
description hypothetical protein
nr
ID XP_012077019.1
description PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
swissprot
ID Q9LYG9
description Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1
trembl
ID A0A067KCM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07463 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37626: 20585-22809
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003656_030 0.0 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
2 Hb_005488_070 0.0889979602 - - putative cytochrome P450 [Oryza sativa Japonica Group]
3 Hb_007178_010 0.0933807138 - - pseudo-hevein [Hevea brasiliensis]
4 Hb_000208_240 0.0954686526 - - PREDICTED: uncharacterized protein LOC105631307 [Jatropha curcas]
5 Hb_019654_070 0.0958718585 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
6 Hb_003627_020 0.0985838826 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
7 Hb_004126_010 0.1096084011 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
8 Hb_000988_050 0.1123161667 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011021_030 0.1129736569 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
10 Hb_017134_040 0.1168613297 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]
11 Hb_009510_030 0.118429747 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
12 Hb_019613_020 0.1203293707 - - phospholipase C, putative [Ricinus communis]
13 Hb_001252_160 0.1211051031 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]
14 Hb_176022_020 0.1217060055 - - cytochrome P450, putative [Ricinus communis]
15 Hb_005488_100 0.1219292318 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
16 Hb_002506_010 0.1225222392 - - choline transporter-related family protein [Populus trichocarpa]
17 Hb_004884_060 0.1259709647 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
18 Hb_001102_110 0.1263747919 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1-like [Jatropha curcas]
19 Hb_007810_040 0.1267959799 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
20 Hb_013479_020 0.1284680058 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]

Gene co-expression network

sample Hb_003656_030 Hb_003656_030 Hb_005488_070 Hb_005488_070 Hb_003656_030--Hb_005488_070 Hb_007178_010 Hb_007178_010 Hb_003656_030--Hb_007178_010 Hb_000208_240 Hb_000208_240 Hb_003656_030--Hb_000208_240 Hb_019654_070 Hb_019654_070 Hb_003656_030--Hb_019654_070 Hb_003627_020 Hb_003627_020 Hb_003656_030--Hb_003627_020 Hb_004126_010 Hb_004126_010 Hb_003656_030--Hb_004126_010 Hb_005488_070--Hb_000208_240 Hb_019613_020 Hb_019613_020 Hb_005488_070--Hb_019613_020 Hb_009510_030 Hb_009510_030 Hb_005488_070--Hb_009510_030 Hb_035524_030 Hb_035524_030 Hb_005488_070--Hb_035524_030 Hb_005488_070--Hb_003627_020 Hb_002232_180 Hb_002232_180 Hb_007178_010--Hb_002232_180 Hb_007810_040 Hb_007810_040 Hb_007178_010--Hb_007810_040 Hb_002067_160 Hb_002067_160 Hb_007178_010--Hb_002067_160 Hb_005488_100 Hb_005488_100 Hb_007178_010--Hb_005488_100 Hb_003906_110 Hb_003906_110 Hb_007178_010--Hb_003906_110 Hb_010931_100 Hb_010931_100 Hb_007178_010--Hb_010931_100 Hb_000988_050 Hb_000988_050 Hb_000208_240--Hb_000988_050 Hb_176022_020 Hb_176022_020 Hb_000208_240--Hb_176022_020 Hb_002506_010 Hb_002506_010 Hb_000208_240--Hb_002506_010 Hb_003404_030 Hb_003404_030 Hb_000208_240--Hb_003404_030 Hb_098315_100 Hb_098315_100 Hb_019654_070--Hb_098315_100 Hb_000155_080 Hb_000155_080 Hb_019654_070--Hb_000155_080 Hb_000085_340 Hb_000085_340 Hb_019654_070--Hb_000085_340 Hb_019654_070--Hb_005488_100 Hb_019654_070--Hb_007178_010 Hb_003627_020--Hb_004126_010 Hb_003507_020 Hb_003507_020 Hb_003627_020--Hb_003507_020 Hb_003627_020--Hb_007178_010 Hb_003627_020--Hb_009510_030 Hb_004126_010--Hb_009510_030 Hb_014067_010 Hb_014067_010 Hb_004126_010--Hb_014067_010 Hb_026048_090 Hb_026048_090 Hb_004126_010--Hb_026048_090 Hb_000057_060 Hb_000057_060 Hb_004126_010--Hb_000057_060 Hb_003001_030 Hb_003001_030 Hb_004126_010--Hb_003001_030 Hb_004126_010--Hb_002506_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
269.6 4.6593 2.09883 33.4911 376.563 408.399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
206.891 100.093 191.283 41.6508 6.23237

CAGE analysis