Hb_003656_070

Information

Type -
Description -
Location Contig3656: 73480-76344
Sequence    

Annotation

kegg
ID cic:CICLE_v10009411mg
description hypothetical protein
nr
ID XP_006451568.1
description hypothetical protein CICLE_v10009411mg [Citrus clementina]
swissprot
ID Q9SKI2
description Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2
trembl
ID A0A067F5W0
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g043389mg PE=4 SV=1
Gene Ontology
ID GO:0000815
description vacuolar protein sorting-associated protein 2 homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37628: 73546-76318
cDNA
(Sanger)
(ID:Location)		 022_L17.ab1: 73980-76318

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003656_070 0.0 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
2 Hb_008173_090 0.048052455 - - glutathione peroxidase, putative [Ricinus communis]
3 Hb_001047_230 0.0496468784 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_000574_480 0.049988186 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
5 Hb_029866_060 0.0633753916 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
6 Hb_000111_330 0.0637083908 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
7 Hb_004586_320 0.0637307726 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
8 Hb_000334_210 0.0644430188 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
9 Hb_001235_190 0.0700926085 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
10 Hb_002110_120 0.0721444768 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
11 Hb_000363_480 0.0723135081 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
12 Hb_000111_340 0.0734206566 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
13 Hb_005511_160 0.0737133304 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
14 Hb_129204_030 0.0754882221 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
15 Hb_000920_110 0.0761938196 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
16 Hb_010672_060 0.0767576065 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
17 Hb_001269_630 0.0782306106 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
18 Hb_000608_370 0.0785409055 - - acyl-carrier-protein [Triadica sebifera]
19 Hb_000417_360 0.0786817365 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
20 Hb_001998_050 0.0787866995 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003656_070 Hb_003656_070 Hb_008173_090 Hb_008173_090 Hb_003656_070--Hb_008173_090 Hb_001047_230 Hb_001047_230 Hb_003656_070--Hb_001047_230 Hb_000574_480 Hb_000574_480 Hb_003656_070--Hb_000574_480 Hb_029866_060 Hb_029866_060 Hb_003656_070--Hb_029866_060 Hb_000111_330 Hb_000111_330 Hb_003656_070--Hb_000111_330 Hb_004586_320 Hb_004586_320 Hb_003656_070--Hb_004586_320 Hb_001235_190 Hb_001235_190 Hb_008173_090--Hb_001235_190 Hb_000200_100 Hb_000200_100 Hb_008173_090--Hb_000200_100 Hb_008173_090--Hb_000574_480 Hb_000970_010 Hb_000970_010 Hb_008173_090--Hb_000970_010 Hb_002182_060 Hb_002182_060 Hb_008173_090--Hb_002182_060 Hb_000608_370 Hb_000608_370 Hb_001047_230--Hb_000608_370 Hb_000920_110 Hb_000920_110 Hb_001047_230--Hb_000920_110 Hb_129204_030 Hb_129204_030 Hb_001047_230--Hb_129204_030 Hb_000334_210 Hb_000334_210 Hb_001047_230--Hb_000334_210 Hb_007416_030 Hb_007416_030 Hb_001047_230--Hb_007416_030 Hb_001998_050 Hb_001998_050 Hb_000574_480--Hb_001998_050 Hb_002963_010 Hb_002963_010 Hb_000574_480--Hb_002963_010 Hb_012675_060 Hb_012675_060 Hb_000574_480--Hb_012675_060 Hb_000173_220 Hb_000173_220 Hb_000574_480--Hb_000173_220 Hb_029866_060--Hb_008173_090 Hb_002284_010 Hb_002284_010 Hb_029866_060--Hb_002284_010 Hb_029866_060--Hb_000111_330 Hb_002163_020 Hb_002163_020 Hb_029866_060--Hb_002163_020 Hb_029866_060--Hb_129204_030 Hb_000111_330--Hb_000574_480 Hb_011173_050 Hb_011173_050 Hb_000111_330--Hb_011173_050 Hb_000201_120 Hb_000201_120 Hb_000111_330--Hb_000201_120 Hb_000111_330--Hb_129204_030 Hb_004586_320--Hb_012675_060 Hb_007943_090 Hb_007943_090 Hb_004586_320--Hb_007943_090 Hb_004586_320--Hb_001998_050 Hb_004586_320--Hb_000574_480 Hb_148200_010 Hb_148200_010 Hb_004586_320--Hb_148200_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.6205 22.9863 20.514 22.6099 31.1265 27.9439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.9045 102.647 52.9218 24.4276 14.5237

CAGE analysis