Hb_003656_130

Information

Type -
Description -
Location Contig3656: 127076-133608
Sequence    

Annotation

kegg
ID cic:CICLE_v10008959mg
description hypothetical protein
nr
ID XP_012077007.1
description PREDICTED: protein bem46 isoform X2 [Jatropha curcas]
swissprot
ID P54069
description Protein bem46 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bem46 PE=2 SV=3
trembl
ID A0A067KFV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07454 PE=4 SV=1
Gene Ontology
ID GO:0005783
description protein bem46

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37644: 127112-127415 , PASA_asmbl_37645: 131786-133580
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003656_130 0.0 - - PREDICTED: protein bem46 isoform X2 [Jatropha curcas]
2 Hb_000012_090 0.0697135233 - - 3'-5' exonuclease, putative [Ricinus communis]
3 Hb_010120_030 0.0724697165 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
4 Hb_018790_030 0.0731221727 - - PREDICTED: cyclic phosphodiesterase-like [Jatropha curcas]
5 Hb_000956_030 0.0760348472 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
6 Hb_000803_300 0.0828853198 - - nuclear movement protein nudc, putative [Ricinus communis]
7 Hb_002149_020 0.0835343808 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
8 Hb_006922_080 0.0840132906 - - PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Glycine max]
9 Hb_005016_170 0.0880336994 - - conserved hypothetical protein [Ricinus communis]
10 Hb_123475_010 0.088141049 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
11 Hb_002475_160 0.0895817344 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
12 Hb_003434_060 0.0903076134 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
13 Hb_003502_080 0.0908679683 - - vacuolar protein sorting, putative [Ricinus communis]
14 Hb_000390_060 0.0910719377 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
15 Hb_000120_500 0.0918981291 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
16 Hb_007044_080 0.0919021722 - - PREDICTED: transmembrane protein 33 homolog [Jatropha curcas]
17 Hb_000943_070 0.0919453968 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
18 Hb_022137_060 0.0929142576 - - 1-acylglycerophosphocholine O-acyltransferase [Vernicia fordii]
19 Hb_000009_170 0.0929315413 - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative [Ricinus communis]
20 Hb_004198_010 0.0945931703 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]

Gene co-expression network

sample Hb_003656_130 Hb_003656_130 Hb_000012_090 Hb_000012_090 Hb_003656_130--Hb_000012_090 Hb_010120_030 Hb_010120_030 Hb_003656_130--Hb_010120_030 Hb_018790_030 Hb_018790_030 Hb_003656_130--Hb_018790_030 Hb_000956_030 Hb_000956_030 Hb_003656_130--Hb_000956_030 Hb_000803_300 Hb_000803_300 Hb_003656_130--Hb_000803_300 Hb_002149_020 Hb_002149_020 Hb_003656_130--Hb_002149_020 Hb_028639_060 Hb_028639_060 Hb_000012_090--Hb_028639_060 Hb_006922_080 Hb_006922_080 Hb_000012_090--Hb_006922_080 Hb_003728_020 Hb_003728_020 Hb_000012_090--Hb_003728_020 Hb_003453_020 Hb_003453_020 Hb_000012_090--Hb_003453_020 Hb_002014_080 Hb_002014_080 Hb_000012_090--Hb_002014_080 Hb_003602_040 Hb_003602_040 Hb_000012_090--Hb_003602_040 Hb_022137_060 Hb_022137_060 Hb_010120_030--Hb_022137_060 Hb_010120_030--Hb_000012_090 Hb_000529_160 Hb_000529_160 Hb_010120_030--Hb_000529_160 Hb_000049_040 Hb_000049_040 Hb_010120_030--Hb_000049_040 Hb_000365_310 Hb_000365_310 Hb_010120_030--Hb_000365_310 Hb_007059_010 Hb_007059_010 Hb_018790_030--Hb_007059_010 Hb_002671_100 Hb_002671_100 Hb_018790_030--Hb_002671_100 Hb_000933_090 Hb_000933_090 Hb_018790_030--Hb_000933_090 Hb_003090_080 Hb_003090_080 Hb_018790_030--Hb_003090_080 Hb_018790_030--Hb_002149_020 Hb_004198_010 Hb_004198_010 Hb_000956_030--Hb_004198_010 Hb_003434_060 Hb_003434_060 Hb_000956_030--Hb_003434_060 Hb_000120_500 Hb_000120_500 Hb_000956_030--Hb_000120_500 Hb_002097_090 Hb_002097_090 Hb_000956_030--Hb_002097_090 Hb_004450_010 Hb_004450_010 Hb_000956_030--Hb_004450_010 Hb_000236_370 Hb_000236_370 Hb_000956_030--Hb_000236_370 Hb_000803_300--Hb_002097_090 Hb_002400_180 Hb_002400_180 Hb_000803_300--Hb_002400_180 Hb_000522_090 Hb_000522_090 Hb_000803_300--Hb_000522_090 Hb_005245_130 Hb_005245_130 Hb_000803_300--Hb_005245_130 Hb_009265_080 Hb_009265_080 Hb_000803_300--Hb_009265_080 Hb_000139_250 Hb_000139_250 Hb_000803_300--Hb_000139_250 Hb_002609_110 Hb_002609_110 Hb_002149_020--Hb_002609_110 Hb_066182_010 Hb_066182_010 Hb_002149_020--Hb_066182_010 Hb_004440_090 Hb_004440_090 Hb_002149_020--Hb_004440_090 Hb_002391_300 Hb_002391_300 Hb_002149_020--Hb_002391_300 Hb_000300_060 Hb_000300_060 Hb_002149_020--Hb_000300_060 Hb_003005_020 Hb_003005_020 Hb_002149_020--Hb_003005_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.4253 13.528 8.385 19.5048 44.5972 43.0203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.3802 19.6516 20.1854 16.3265 6.10894

CAGE analysis