Hb_003656_140

Information

Type -
Description -
Location Contig3656: 135959-137981
Sequence    

Annotation

kegg
ID rcu:RCOM_1046170
description DNA binding protein, putative
nr
ID XP_012077002.1
description PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
swissprot
ID Q7XUW3
description PHD finger protein ALFIN-LIKE 4 OS=Oryza sativa subsp. japonica GN=Os04g0444900 PE=2 SV=2
trembl
ID A0A067KCL5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07453 PE=4 SV=1
Gene Ontology
ID GO:0005829
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37648: 136019-143936 , PASA_asmbl_37649: 136019-141557
cDNA
(Sanger)
(ID:Location)		 003_N03.ab1: 136030-141314 , 014_L24.ab1: 136030-141243 , 028_I21.ab1: 136030-141229 , 043_A12.ab1: 136030-137677 , 047_H02.ab1: 136030-141309

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003656_140 0.0 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
2 Hb_002023_020 0.0687139258 - - PREDICTED: aladin isoform X2 [Jatropha curcas]
3 Hb_137403_010 0.0745843976 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
4 Hb_041392_010 0.0756052638 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
5 Hb_187739_020 0.0818016876 - - PREDICTED: B2 protein [Jatropha curcas]
6 Hb_150360_010 0.0885238817 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
7 Hb_000866_030 0.0903478156 - - hypothetical protein RCOM_1615820 [Ricinus communis]
8 Hb_002982_040 0.0938177232 - - mta/sah nucleosidase, putative [Ricinus communis]
9 Hb_033312_140 0.0946154721 - - RNA and export factor-binding family protein [Populus trichocarpa]
10 Hb_061908_010 0.0952985776 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
11 Hb_039253_010 0.0985707675 - - PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X2 [Jatropha curcas]
12 Hb_004450_010 0.0990343985 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
13 Hb_185830_020 0.1002083678 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_003434_060 0.102717008 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
15 Hb_000183_040 0.1033869663 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
16 Hb_000069_160 0.1036325363 - - -
17 Hb_004934_070 0.1037630313 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
18 Hb_000956_030 0.1043200095 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
19 Hb_005000_100 0.1080969906 - - PCI domain-containing protein 2 [Morus notabilis]
20 Hb_007317_190 0.1089602939 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]

Gene co-expression network

sample Hb_003656_140 Hb_003656_140 Hb_002023_020 Hb_002023_020 Hb_003656_140--Hb_002023_020 Hb_137403_010 Hb_137403_010 Hb_003656_140--Hb_137403_010 Hb_041392_010 Hb_041392_010 Hb_003656_140--Hb_041392_010 Hb_187739_020 Hb_187739_020 Hb_003656_140--Hb_187739_020 Hb_150360_010 Hb_150360_010 Hb_003656_140--Hb_150360_010 Hb_000866_030 Hb_000866_030 Hb_003656_140--Hb_000866_030 Hb_039253_010 Hb_039253_010 Hb_002023_020--Hb_039253_010 Hb_002023_020--Hb_137403_010 Hb_000364_150 Hb_000364_150 Hb_002023_020--Hb_000364_150 Hb_000307_200 Hb_000307_200 Hb_002023_020--Hb_000307_200 Hb_071736_010 Hb_071736_010 Hb_002023_020--Hb_071736_010 Hb_002982_040 Hb_002982_040 Hb_137403_010--Hb_002982_040 Hb_137403_010--Hb_000364_150 Hb_005862_010 Hb_005862_010 Hb_137403_010--Hb_005862_010 Hb_137403_010--Hb_150360_010 Hb_033312_140 Hb_033312_140 Hb_041392_010--Hb_033312_140 Hb_023001_050 Hb_023001_050 Hb_041392_010--Hb_023001_050 Hb_000606_080 Hb_000606_080 Hb_041392_010--Hb_000606_080 Hb_150204_010 Hb_150204_010 Hb_041392_010--Hb_150204_010 Hb_041392_010--Hb_150360_010 Hb_187739_020--Hb_000866_030 Hb_187739_020--Hb_002982_040 Hb_000160_220 Hb_000160_220 Hb_187739_020--Hb_000160_220 Hb_031862_180 Hb_031862_180 Hb_187739_020--Hb_031862_180 Hb_008714_020 Hb_008714_020 Hb_187739_020--Hb_008714_020 Hb_004934_070 Hb_004934_070 Hb_150360_010--Hb_004934_070 Hb_000183_040 Hb_000183_040 Hb_150360_010--Hb_000183_040 Hb_002374_020 Hb_002374_020 Hb_150360_010--Hb_002374_020 Hb_006913_040 Hb_006913_040 Hb_000866_030--Hb_006913_040 Hb_000866_030--Hb_008714_020 Hb_000866_030--Hb_002982_040 Hb_027028_020 Hb_027028_020 Hb_000866_030--Hb_027028_020 Hb_002942_160 Hb_002942_160 Hb_000866_030--Hb_002942_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
167.873 74.7681 52.2414 106.794 145.998 400.69
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
174.192 104.13 83.4924 107.07 33.3703

CAGE analysis