Hb_003656_180

Information

Type -
Description -
Location Contig3656: 150209-154328
Sequence    

Annotation

kegg
ID rcu:RCOM_1046260
description hypothetical protein
nr
ID XP_012076998.1
description PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KNL5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07451 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37655: 150075-151834
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003656_180 0.0 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
2 Hb_117552_010 0.059899096 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_102269_010 0.070384576 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
4 Hb_003884_030 0.0766677224 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
5 Hb_000785_040 0.0797809513 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
6 Hb_001473_090 0.0805391966 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
7 Hb_002551_070 0.0817818065 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
8 Hb_001493_040 0.0827836285 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
9 Hb_003044_020 0.086604436 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
10 Hb_003029_130 0.0880109139 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
11 Hb_000183_020 0.0881783623 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
12 Hb_003847_120 0.0883542347 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_001811_120 0.0898561748 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
14 Hb_000935_090 0.0904178076 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
15 Hb_002235_160 0.0919312374 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
16 Hb_007062_020 0.0934031732 - - gcn4-complementing protein, putative [Ricinus communis]
17 Hb_006882_020 0.0936765962 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000475_020 0.0937406523 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
19 Hb_002493_020 0.0949805427 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
20 Hb_002301_080 0.0950053537 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003656_180 Hb_003656_180 Hb_117552_010 Hb_117552_010 Hb_003656_180--Hb_117552_010 Hb_102269_010 Hb_102269_010 Hb_003656_180--Hb_102269_010 Hb_003884_030 Hb_003884_030 Hb_003656_180--Hb_003884_030 Hb_000785_040 Hb_000785_040 Hb_003656_180--Hb_000785_040 Hb_001473_090 Hb_001473_090 Hb_003656_180--Hb_001473_090 Hb_002551_070 Hb_002551_070 Hb_003656_180--Hb_002551_070 Hb_002301_080 Hb_002301_080 Hb_117552_010--Hb_002301_080 Hb_002235_160 Hb_002235_160 Hb_117552_010--Hb_002235_160 Hb_001493_040 Hb_001493_040 Hb_117552_010--Hb_001493_040 Hb_002400_240 Hb_002400_240 Hb_117552_010--Hb_002400_240 Hb_000922_370 Hb_000922_370 Hb_117552_010--Hb_000922_370 Hb_102269_010--Hb_001473_090 Hb_001811_120 Hb_001811_120 Hb_102269_010--Hb_001811_120 Hb_000475_020 Hb_000475_020 Hb_102269_010--Hb_000475_020 Hb_003029_130 Hb_003029_130 Hb_102269_010--Hb_003029_130 Hb_000160_290 Hb_000160_290 Hb_102269_010--Hb_000160_290 Hb_027380_140 Hb_027380_140 Hb_003884_030--Hb_027380_140 Hb_000035_410 Hb_000035_410 Hb_003884_030--Hb_000035_410 Hb_089140_050 Hb_089140_050 Hb_003884_030--Hb_089140_050 Hb_004108_100 Hb_004108_100 Hb_003884_030--Hb_004108_100 Hb_000429_220 Hb_000429_220 Hb_003884_030--Hb_000429_220 Hb_007062_020 Hb_007062_020 Hb_000785_040--Hb_007062_020 Hb_000470_070 Hb_000470_070 Hb_000785_040--Hb_000470_070 Hb_003966_030 Hb_003966_030 Hb_000785_040--Hb_003966_030 Hb_000785_040--Hb_027380_140 Hb_001025_080 Hb_001025_080 Hb_000785_040--Hb_001025_080 Hb_000785_040--Hb_001473_090 Hb_000209_070 Hb_000209_070 Hb_001473_090--Hb_000209_070 Hb_002749_110 Hb_002749_110 Hb_001473_090--Hb_002749_110 Hb_001178_150 Hb_001178_150 Hb_001473_090--Hb_001178_150 Hb_000347_570 Hb_000347_570 Hb_001473_090--Hb_000347_570 Hb_009151_020 Hb_009151_020 Hb_001473_090--Hb_009151_020 Hb_003623_030 Hb_003623_030 Hb_002551_070--Hb_003623_030 Hb_032631_040 Hb_032631_040 Hb_002551_070--Hb_032631_040 Hb_002974_060 Hb_002974_060 Hb_002551_070--Hb_002974_060 Hb_002551_070--Hb_003966_030 Hb_000183_020 Hb_000183_020 Hb_002551_070--Hb_000183_020 Hb_048476_180 Hb_048476_180 Hb_002551_070--Hb_048476_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.25715 8.42344 4.07409 5.43734 9.4069 15.7281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.45513 3.36255 4.74863 5.06295 8.57779

CAGE analysis