Hb_003657_010

Information

Type -
Description -
Location Contig3657: 41686-43194
Sequence    

Annotation

kegg
ID rcu:RCOM_1248090
description hypothetical protein
nr
ID XP_002527735.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SP16
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1248090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37660: 40930-41410
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003657_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004117_260 0.0701903406 - - conserved hypothetical protein [Ricinus communis]
3 Hb_022256_020 0.0776889948 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Jatropha curcas]
4 Hb_004208_030 0.0802655903 transcription factor TF Family: MYB-related PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
5 Hb_000197_250 0.0835908575 - - Chaperone protein dnaJ, putative [Ricinus communis]
6 Hb_000008_440 0.0839943069 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
7 Hb_010068_080 0.0853262353 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
8 Hb_006162_030 0.0864316117 - - PREDICTED: alpha-L-fucosidase 2-like isoform X1 [Populus euphratica]
9 Hb_000484_130 0.0872323978 - - splicing factor, putative [Ricinus communis]
10 Hb_002217_020 0.0887762461 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
11 Hb_000393_020 0.090098669 - - lipid binding protein, putative [Ricinus communis]
12 Hb_002675_130 0.0903338896 - - PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit isoform X1 [Jatropha curcas]
13 Hb_000926_090 0.0921672011 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
14 Hb_005245_100 0.0924684409 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic-like [Jatropha curcas]
15 Hb_001635_190 0.0936624423 - - RNA m5u methyltransferase, putative [Ricinus communis]
16 Hb_007810_010 0.0942338544 - - PREDICTED: uncharacterized protein LOC105647655 isoform X1 [Jatropha curcas]
17 Hb_013358_040 0.095501771 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
18 Hb_000398_100 0.0960724866 - - Uncharacterized protein isoform 2 [Theobroma cacao]
19 Hb_000304_080 0.0966552736 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
20 Hb_050622_050 0.09715308 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]

Gene co-expression network

sample Hb_003657_010 Hb_003657_010 Hb_004117_260 Hb_004117_260 Hb_003657_010--Hb_004117_260 Hb_022256_020 Hb_022256_020 Hb_003657_010--Hb_022256_020 Hb_004208_030 Hb_004208_030 Hb_003657_010--Hb_004208_030 Hb_000197_250 Hb_000197_250 Hb_003657_010--Hb_000197_250 Hb_000008_440 Hb_000008_440 Hb_003657_010--Hb_000008_440 Hb_010068_080 Hb_010068_080 Hb_003657_010--Hb_010068_080 Hb_000393_020 Hb_000393_020 Hb_004117_260--Hb_000393_020 Hb_050622_050 Hb_050622_050 Hb_004117_260--Hb_050622_050 Hb_006017_010 Hb_006017_010 Hb_004117_260--Hb_006017_010 Hb_000926_090 Hb_000926_090 Hb_004117_260--Hb_000926_090 Hb_001314_070 Hb_001314_070 Hb_004117_260--Hb_001314_070 Hb_000484_130 Hb_000484_130 Hb_022256_020--Hb_000484_130 Hb_002675_130 Hb_002675_130 Hb_022256_020--Hb_002675_130 Hb_002234_090 Hb_002234_090 Hb_022256_020--Hb_002234_090 Hb_004916_010 Hb_004916_010 Hb_022256_020--Hb_004916_010 Hb_033772_030 Hb_033772_030 Hb_022256_020--Hb_033772_030 Hb_002818_030 Hb_002818_030 Hb_022256_020--Hb_002818_030 Hb_013358_040 Hb_013358_040 Hb_004208_030--Hb_013358_040 Hb_001247_250 Hb_001247_250 Hb_004208_030--Hb_001247_250 Hb_002754_010 Hb_002754_010 Hb_004208_030--Hb_002754_010 Hb_002073_200 Hb_002073_200 Hb_004208_030--Hb_002073_200 Hb_000172_430 Hb_000172_430 Hb_004208_030--Hb_000172_430 Hb_002110_150 Hb_002110_150 Hb_004208_030--Hb_002110_150 Hb_000256_040 Hb_000256_040 Hb_000197_250--Hb_000256_040 Hb_005245_100 Hb_005245_100 Hb_000197_250--Hb_005245_100 Hb_000197_250--Hb_004117_260 Hb_000197_250--Hb_000393_020 Hb_006162_030 Hb_006162_030 Hb_000197_250--Hb_006162_030 Hb_032202_040 Hb_032202_040 Hb_000008_440--Hb_032202_040 Hb_001404_110 Hb_001404_110 Hb_000008_440--Hb_001404_110 Hb_002542_110 Hb_002542_110 Hb_000008_440--Hb_002542_110 Hb_000497_300 Hb_000497_300 Hb_000008_440--Hb_000497_300 Hb_000008_440--Hb_010068_080 Hb_003428_010 Hb_003428_010 Hb_010068_080--Hb_003428_010 Hb_003849_110 Hb_003849_110 Hb_010068_080--Hb_003849_110 Hb_001304_110 Hb_001304_110 Hb_010068_080--Hb_001304_110 Hb_000640_040 Hb_000640_040 Hb_010068_080--Hb_000640_040 Hb_010068_080--Hb_002542_110 Hb_000029_060 Hb_000029_060 Hb_010068_080--Hb_000029_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.92884 21.1836 20.371 12.9239 10.2896 9.24999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2433 15.6406 25.5863 12.9526 14.1945

CAGE analysis