Hb_003658_030

Information

Type -
Description -
Location Contig3658: 44122-45625
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003658_030 0.0 - - -
2 Hb_000701_070 0.1120679006 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_005214_020 0.1420760223 - - hypothetical protein JCGZ_12886 [Jatropha curcas]
4 Hb_176121_010 0.1787419889 - - -
5 Hb_000175_550 0.1931687226 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
6 Hb_001623_440 0.2508535891 - - hypothetical protein JCGZ_12908 [Jatropha curcas]
7 Hb_123304_010 0.2675414522 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
8 Hb_000248_120 0.2861010817 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
9 Hb_001032_040 0.3102102372 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
10 Hb_104498_030 0.3157002512 - - hypothetical protein JCGZ_11092 [Jatropha curcas]
11 Hb_000407_060 0.3209506917 - - -
12 Hb_000893_030 0.32585773 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
13 Hb_089341_010 0.3388293728 - - Uncharacterized protein TCM_018339 [Theobroma cacao]
14 Hb_027337_070 0.339470093 - - hypothetical protein POPTR_0001s29030g [Populus trichocarpa]
15 Hb_002367_120 0.3432551651 - - -
16 Hb_003238_010 0.3459413795 - - PREDICTED: uncharacterized protein LOC104880636 [Vitis vinifera]
17 Hb_007188_060 0.3540354769 - - -
18 Hb_049884_010 0.3557239142 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_088176_010 0.3623666759 - - -
20 Hb_009164_020 0.3722813187 - - hypothetical protein PRUPE_ppa026212mg, partial [Prunus persica]

Gene co-expression network

sample Hb_003658_030 Hb_003658_030 Hb_000701_070 Hb_000701_070 Hb_003658_030--Hb_000701_070 Hb_005214_020 Hb_005214_020 Hb_003658_030--Hb_005214_020 Hb_176121_010 Hb_176121_010 Hb_003658_030--Hb_176121_010 Hb_000175_550 Hb_000175_550 Hb_003658_030--Hb_000175_550 Hb_001623_440 Hb_001623_440 Hb_003658_030--Hb_001623_440 Hb_123304_010 Hb_123304_010 Hb_003658_030--Hb_123304_010 Hb_000701_070--Hb_123304_010 Hb_000701_070--Hb_176121_010 Hb_000701_070--Hb_000175_550 Hb_000893_030 Hb_000893_030 Hb_000701_070--Hb_000893_030 Hb_000701_070--Hb_005214_020 Hb_005214_020--Hb_176121_010 Hb_005214_020--Hb_000175_550 Hb_001501_050 Hb_001501_050 Hb_005214_020--Hb_001501_050 Hb_005214_020--Hb_001623_440 Hb_176121_010--Hb_000175_550 Hb_011942_030 Hb_011942_030 Hb_176121_010--Hb_011942_030 Hb_002897_020 Hb_002897_020 Hb_176121_010--Hb_002897_020 Hb_002367_120 Hb_002367_120 Hb_000175_550--Hb_002367_120 Hb_104498_030 Hb_104498_030 Hb_000175_550--Hb_104498_030 Hb_057486_010 Hb_057486_010 Hb_001623_440--Hb_057486_010 Hb_027337_070 Hb_027337_070 Hb_001623_440--Hb_027337_070 Hb_001032_040 Hb_001032_040 Hb_001623_440--Hb_001032_040 Hb_012150_050 Hb_012150_050 Hb_001623_440--Hb_012150_050 Hb_123304_010--Hb_000893_030 Hb_009164_020 Hb_009164_020 Hb_123304_010--Hb_009164_020 Hb_000172_500 Hb_000172_500 Hb_123304_010--Hb_000172_500 Hb_123304_010--Hb_001032_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.201707 0.201493 0 0 0.201365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis