Hb_003661_010

Information

Type -
Description -
Location Contig3661: 1529-8061
Sequence    

Annotation

kegg
ID rcu:RCOM_1668730
description zinc/iron transporter, putative (EC:1.3.1.74)
nr
ID XP_012079064.1
description PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
swissprot
ID O64738
description Zinc transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ZIP6 PE=3 SV=1
trembl
ID A0A067LLY5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17392 PE=4 SV=1
Gene Ontology
ID GO:0016021
description zinc transporter chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37691: 1605-8047 , PASA_asmbl_37692: 2295-2612
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003661_010 0.0 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
2 Hb_000844_050 0.048972321 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
3 Hb_048476_080 0.0508351234 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
4 Hb_000300_030 0.0520191373 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
5 Hb_160608_010 0.0571874817 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
6 Hb_003680_020 0.0592829958 - - UDP-glucosyltransferase, putative [Ricinus communis]
7 Hb_001414_010 0.0594250187 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
8 Hb_005305_130 0.0606624117 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
9 Hb_021977_010 0.0690348143 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
10 Hb_000809_250 0.0714740721 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
11 Hb_001507_050 0.0721998516 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000358_220 0.0724306945 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
13 Hb_009158_060 0.0728584821 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
14 Hb_008165_020 0.0730278895 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
15 Hb_000103_290 0.0787527749 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
16 Hb_000960_080 0.0794709272 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
17 Hb_003124_270 0.0801313103 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
18 Hb_001998_210 0.0804420684 - - unnamed protein product [Coffea canephora]
19 Hb_009476_120 0.0809792981 - - Clathrin heavy chain 1 [Glycine soja]
20 Hb_001159_060 0.0833288314 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]

Gene co-expression network

sample Hb_003661_010 Hb_003661_010 Hb_000844_050 Hb_000844_050 Hb_003661_010--Hb_000844_050 Hb_048476_080 Hb_048476_080 Hb_003661_010--Hb_048476_080 Hb_000300_030 Hb_000300_030 Hb_003661_010--Hb_000300_030 Hb_160608_010 Hb_160608_010 Hb_003661_010--Hb_160608_010 Hb_003680_020 Hb_003680_020 Hb_003661_010--Hb_003680_020 Hb_001414_010 Hb_001414_010 Hb_003661_010--Hb_001414_010 Hb_000844_050--Hb_048476_080 Hb_003124_270 Hb_003124_270 Hb_000844_050--Hb_003124_270 Hb_000844_050--Hb_003680_020 Hb_000809_250 Hb_000809_250 Hb_000844_050--Hb_000809_250 Hb_001507_050 Hb_001507_050 Hb_000844_050--Hb_001507_050 Hb_000103_290 Hb_000103_290 Hb_048476_080--Hb_000103_290 Hb_048476_080--Hb_001507_050 Hb_006100_020 Hb_006100_020 Hb_048476_080--Hb_006100_020 Hb_001008_130 Hb_001008_130 Hb_048476_080--Hb_001008_130 Hb_005305_100 Hb_005305_100 Hb_000300_030--Hb_005305_100 Hb_001541_150 Hb_001541_150 Hb_000300_030--Hb_001541_150 Hb_000300_030--Hb_001414_010 Hb_011457_140 Hb_011457_140 Hb_000300_030--Hb_011457_140 Hb_000358_220 Hb_000358_220 Hb_000300_030--Hb_000358_220 Hb_006478_030 Hb_006478_030 Hb_160608_010--Hb_006478_030 Hb_005305_130 Hb_005305_130 Hb_160608_010--Hb_005305_130 Hb_160608_010--Hb_001414_010 Hb_160608_010--Hb_001507_050 Hb_000318_150 Hb_000318_150 Hb_160608_010--Hb_000318_150 Hb_000960_080 Hb_000960_080 Hb_003680_020--Hb_000960_080 Hb_003680_020--Hb_001507_050 Hb_003680_020--Hb_048476_080 Hb_000059_240 Hb_000059_240 Hb_003680_020--Hb_000059_240 Hb_021977_010 Hb_021977_010 Hb_001414_010--Hb_021977_010 Hb_009476_120 Hb_009476_120 Hb_001414_010--Hb_009476_120 Hb_008165_020 Hb_008165_020 Hb_001414_010--Hb_008165_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7038 53.7544 46.044 47.921 21.9024 17.7137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.6247 11.9435 16.141 38.4743 63.8534

CAGE analysis