Hb_003663_060

Information

Type -
Description -
Location Contig3663: 36976-38667
Sequence    

Annotation

kegg
ID tcc:TCM_034412
description Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 1
nr
ID XP_012073635.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At5g43820 [Jatropha curcas]
swissprot
ID P0C8R0
description Putative pentatricopeptide repeat-containing protein At5g43820 OS=Arabidopsis thaliana GN=At5g43820 PE=3 SV=1
trembl
ID A0A067KKM5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08067 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37695: 35710-41610 , PASA_asmbl_37697: 37520-37974 , PASA_asmbl_37698: 37234-37456
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003663_060 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g43820 [Jatropha curcas]
2 Hb_002681_070 0.1089535026 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
3 Hb_006915_070 0.1130232142 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
4 Hb_000861_020 0.113193908 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
5 Hb_153533_010 0.1161573115 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X3 [Jatropha curcas]
6 Hb_000631_080 0.1177069361 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Jatropha curcas]
7 Hb_004994_380 0.1182389242 - - hypothetical protein JCGZ_14410 [Jatropha curcas]
8 Hb_000034_040 0.1183471154 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
9 Hb_001776_140 0.1206277657 - - PREDICTED: probable GTP-binding protein OBGM, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_000014_150 0.1211053091 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
11 Hb_000062_140 0.1211485733 transcription factor TF Family: GRAS hypothetical protein JCGZ_17897 [Jatropha curcas]
12 Hb_001675_180 0.1215656051 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
13 Hb_008785_040 0.1232683466 - - PREDICTED: DNA repair protein UVH3 [Jatropha curcas]
14 Hb_002084_020 0.1242350032 - - hypothetical protein JCGZ_04066 [Jatropha curcas]
15 Hb_000856_110 0.1253260903 - - PREDICTED: uncharacterized protein LOC105640477 isoform X2 [Jatropha curcas]
16 Hb_004841_010 0.1277439759 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
17 Hb_002276_060 0.1284087177 - - hypothetical protein CISIN_1g002019mg [Citrus sinensis]
18 Hb_001623_510 0.1305692135 - - transporter, putative [Ricinus communis]
19 Hb_010710_070 0.1308948972 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
20 Hb_000016_130 0.1311207575 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]

Gene co-expression network

sample Hb_003663_060 Hb_003663_060 Hb_002681_070 Hb_002681_070 Hb_003663_060--Hb_002681_070 Hb_006915_070 Hb_006915_070 Hb_003663_060--Hb_006915_070 Hb_000861_020 Hb_000861_020 Hb_003663_060--Hb_000861_020 Hb_153533_010 Hb_153533_010 Hb_003663_060--Hb_153533_010 Hb_000631_080 Hb_000631_080 Hb_003663_060--Hb_000631_080 Hb_004994_380 Hb_004994_380 Hb_003663_060--Hb_004994_380 Hb_008785_040 Hb_008785_040 Hb_002681_070--Hb_008785_040 Hb_002681_070--Hb_006915_070 Hb_001019_190 Hb_001019_190 Hb_002681_070--Hb_001019_190 Hb_000034_040 Hb_000034_040 Hb_002681_070--Hb_000034_040 Hb_000819_080 Hb_000819_080 Hb_002681_070--Hb_000819_080 Hb_005496_130 Hb_005496_130 Hb_002681_070--Hb_005496_130 Hb_006915_070--Hb_000034_040 Hb_000345_170 Hb_000345_170 Hb_006915_070--Hb_000345_170 Hb_000116_180 Hb_000116_180 Hb_006915_070--Hb_000116_180 Hb_006915_070--Hb_008785_040 Hb_000856_110 Hb_000856_110 Hb_006915_070--Hb_000856_110 Hb_103118_010 Hb_103118_010 Hb_000861_020--Hb_103118_010 Hb_105123_010 Hb_105123_010 Hb_000861_020--Hb_105123_010 Hb_000861_020--Hb_000631_080 Hb_086639_040 Hb_086639_040 Hb_000861_020--Hb_086639_040 Hb_000061_210 Hb_000061_210 Hb_000861_020--Hb_000061_210 Hb_002154_100 Hb_002154_100 Hb_000861_020--Hb_002154_100 Hb_000193_270 Hb_000193_270 Hb_153533_010--Hb_000193_270 Hb_153533_010--Hb_004994_380 Hb_001951_180 Hb_001951_180 Hb_153533_010--Hb_001951_180 Hb_035755_010 Hb_035755_010 Hb_153533_010--Hb_035755_010 Hb_004218_280 Hb_004218_280 Hb_153533_010--Hb_004218_280 Hb_000574_390 Hb_000574_390 Hb_000631_080--Hb_000574_390 Hb_000631_080--Hb_086639_040 Hb_002685_210 Hb_002685_210 Hb_000631_080--Hb_002685_210 Hb_015941_020 Hb_015941_020 Hb_000631_080--Hb_015941_020 Hb_004225_050 Hb_004225_050 Hb_000631_080--Hb_004225_050 Hb_010710_070 Hb_010710_070 Hb_004994_380--Hb_010710_070 Hb_000076_130 Hb_000076_130 Hb_004994_380--Hb_000076_130 Hb_001014_160 Hb_001014_160 Hb_004994_380--Hb_001014_160 Hb_188063_020 Hb_188063_020 Hb_004994_380--Hb_188063_020 Hb_001141_020 Hb_001141_020 Hb_004994_380--Hb_001141_020 Hb_004963_030 Hb_004963_030 Hb_004994_380--Hb_004963_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.94993 1.90987 1.37523 2.09538 4.38795 7.32078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.48392 4.11159 3.07089 1.596 5.76134

CAGE analysis