Hb_003663_070

Information

Type -
Description -
Location Contig3663: 39606-41529
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37695: 35710-41610 , PASA_asmbl_37696: 38953-39347 , PASA_asmbl_37700: 39656-40341
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003663_070 0.0 - - -
2 Hb_001638_240 0.1157881176 - - PREDICTED: uncharacterized protein LOC100262493 [Vitis vinifera]
3 Hb_000672_120 0.1216875172 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
4 Hb_014834_030 0.1243655318 - - -
5 Hb_001953_090 0.1292579683 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3 [Jatropha curcas]
6 Hb_000322_140 0.1293457308 - - hypothetical protein RCOM_1047200 [Ricinus communis]
7 Hb_002878_010 0.1300915826 - - -
8 Hb_002843_210 0.1330952516 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
9 Hb_004659_060 0.1360967755 - - RAS-related GTP-binding family protein [Populus trichocarpa]
10 Hb_004374_140 0.1372153754 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
11 Hb_000224_120 0.1381842675 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
12 Hb_004336_050 0.1386915221 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
13 Hb_005588_070 0.1435330587 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
14 Hb_000364_020 0.1449186574 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
15 Hb_011457_090 0.1456781418 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
16 Hb_000300_220 0.1460163175 - - PREDICTED: uncharacterized protein LOC105632569 [Jatropha curcas]
17 Hb_003561_030 0.1470310743 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
18 Hb_001158_150 0.1481352145 - - hypothetical protein JCGZ_26407 [Jatropha curcas]
19 Hb_003207_170 0.1525303002 - - PREDICTED: calcium-dependent protein kinase 26 isoform X1 [Jatropha curcas]
20 Hb_010402_050 0.1536171672 - - -

Gene co-expression network

sample Hb_003663_070 Hb_003663_070 Hb_001638_240 Hb_001638_240 Hb_003663_070--Hb_001638_240 Hb_000672_120 Hb_000672_120 Hb_003663_070--Hb_000672_120 Hb_014834_030 Hb_014834_030 Hb_003663_070--Hb_014834_030 Hb_001953_090 Hb_001953_090 Hb_003663_070--Hb_001953_090 Hb_000322_140 Hb_000322_140 Hb_003663_070--Hb_000322_140 Hb_002878_010 Hb_002878_010 Hb_003663_070--Hb_002878_010 Hb_001935_150 Hb_001935_150 Hb_001638_240--Hb_001935_150 Hb_004659_060 Hb_004659_060 Hb_001638_240--Hb_004659_060 Hb_002843_210 Hb_002843_210 Hb_001638_240--Hb_002843_210 Hb_005588_070 Hb_005588_070 Hb_001638_240--Hb_005588_070 Hb_001638_240--Hb_000672_120 Hb_004336_050 Hb_004336_050 Hb_000672_120--Hb_004336_050 Hb_007594_090 Hb_007594_090 Hb_000672_120--Hb_007594_090 Hb_172706_030 Hb_172706_030 Hb_000672_120--Hb_172706_030 Hb_000672_120--Hb_005588_070 Hb_000224_120 Hb_000224_120 Hb_000672_120--Hb_000224_120 Hb_001307_090 Hb_001307_090 Hb_000672_120--Hb_001307_090 Hb_014834_030--Hb_001935_150 Hb_000367_210 Hb_000367_210 Hb_014834_030--Hb_000367_210 Hb_014834_030--Hb_002843_210 Hb_187083_010 Hb_187083_010 Hb_014834_030--Hb_187083_010 Hb_003561_030 Hb_003561_030 Hb_014834_030--Hb_003561_030 Hb_001158_150 Hb_001158_150 Hb_014834_030--Hb_001158_150 Hb_001953_090--Hb_002878_010 Hb_000042_200 Hb_000042_200 Hb_001953_090--Hb_000042_200 Hb_002918_290 Hb_002918_290 Hb_001953_090--Hb_002918_290 Hb_001953_090--Hb_000322_140 Hb_001842_040 Hb_001842_040 Hb_001953_090--Hb_001842_040 Hb_001284_030 Hb_001284_030 Hb_001953_090--Hb_001284_030 Hb_000300_220 Hb_000300_220 Hb_000322_140--Hb_000300_220 Hb_000322_140--Hb_002878_010 Hb_000322_140--Hb_004659_060 Hb_001461_010 Hb_001461_010 Hb_000322_140--Hb_001461_010 Hb_004374_140 Hb_004374_140 Hb_000322_140--Hb_004374_140 Hb_002878_010--Hb_004336_050 Hb_002878_010--Hb_004374_140 Hb_002878_010--Hb_001461_010 Hb_002878_010--Hb_172706_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.410956 0.176317 0.0462676 1.3219 0.294501 1.1502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.82882 2.65231 1.86103 0.230346 0.615787

CAGE analysis