Hb_003666_010

Information

Type -
Description -
Location Contig3666: 22590-22877
Sequence    

Annotation

kegg
ID pop:POPTR_0005s13930g
description POPTRDRAFT_760408; hypothetical protein
nr
ID KDP31842.1
description hypothetical protein JCGZ_12303 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K6W0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12303 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003666_010 0.0 - - hypothetical protein JCGZ_12303 [Jatropha curcas]
2 Hb_003297_020 0.2076226533 - - unknown [Populus trichocarpa x Populus deltoides]
3 Hb_176117_010 0.2492306291 - - Cold-inducible RNA-binding protein [Morus notabilis]
4 Hb_007136_020 0.2605617064 - - PREDICTED: oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic [Populus euphratica]
5 Hb_004241_040 0.2686358841 - - -
6 Hb_000140_490 0.2761202724 - - BnaC01g32630D [Brassica napus]
7 Hb_003849_080 0.2778597031 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_001767_120 0.2784776944 - - -
9 Hb_134956_010 0.2785258107 - - PREDICTED: (S)-coclaurine N-methyltransferase [Jatropha curcas]
10 Hb_070385_010 0.2802018032 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
11 Hb_000953_060 0.281127215 - - PREDICTED: putative phytosulfokines 6 [Vitis vinifera]
12 Hb_181320_010 0.2819257699 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
13 Hb_032496_030 0.284455731 - - PREDICTED: WEB family protein At3g02930, chloroplastic [Jatropha curcas]
14 Hb_183980_010 0.2850791337 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
15 Hb_000808_060 0.2874338513 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Jatropha curcas]
16 Hb_171619_010 0.2879420798 - - protein binding protein, putative [Ricinus communis]
17 Hb_071923_010 0.2889794903 - - -
18 Hb_124961_010 0.293627539 - - hypothetical protein EUGRSUZ_B03893 [Eucalyptus grandis]
19 Hb_002249_110 0.2943630502 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
20 Hb_144898_010 0.2965085241 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_003666_010 Hb_003666_010 Hb_003297_020 Hb_003297_020 Hb_003666_010--Hb_003297_020 Hb_176117_010 Hb_176117_010 Hb_003666_010--Hb_176117_010 Hb_007136_020 Hb_007136_020 Hb_003666_010--Hb_007136_020 Hb_004241_040 Hb_004241_040 Hb_003666_010--Hb_004241_040 Hb_000140_490 Hb_000140_490 Hb_003666_010--Hb_000140_490 Hb_003849_080 Hb_003849_080 Hb_003666_010--Hb_003849_080 Hb_070385_010 Hb_070385_010 Hb_003297_020--Hb_070385_010 Hb_003297_020--Hb_007136_020 Hb_101020_010 Hb_101020_010 Hb_003297_020--Hb_101020_010 Hb_002249_110 Hb_002249_110 Hb_003297_020--Hb_002249_110 Hb_124961_010 Hb_124961_010 Hb_003297_020--Hb_124961_010 Hb_001767_120 Hb_001767_120 Hb_003297_020--Hb_001767_120 Hb_181320_010 Hb_181320_010 Hb_176117_010--Hb_181320_010 Hb_005016_150 Hb_005016_150 Hb_176117_010--Hb_005016_150 Hb_000270_500 Hb_000270_500 Hb_176117_010--Hb_000270_500 Hb_144898_010 Hb_144898_010 Hb_176117_010--Hb_144898_010 Hb_000200_040 Hb_000200_040 Hb_176117_010--Hb_000200_040 Hb_183980_010 Hb_183980_010 Hb_176117_010--Hb_183980_010 Hb_007136_020--Hb_124961_010 Hb_007136_020--Hb_101020_010 Hb_170532_010 Hb_170532_010 Hb_007136_020--Hb_170532_010 Hb_006816_340 Hb_006816_340 Hb_007136_020--Hb_006816_340 Hb_007136_020--Hb_070385_010 Hb_032496_030 Hb_032496_030 Hb_004241_040--Hb_032496_030 Hb_073367_010 Hb_073367_010 Hb_004241_040--Hb_073367_010 Hb_000622_100 Hb_000622_100 Hb_004241_040--Hb_000622_100 Hb_025236_040 Hb_025236_040 Hb_004241_040--Hb_025236_040 Hb_005054_070 Hb_005054_070 Hb_004241_040--Hb_005054_070 Hb_004662_010 Hb_004662_010 Hb_004241_040--Hb_004662_010 Hb_001266_140 Hb_001266_140 Hb_000140_490--Hb_001266_140 Hb_152453_010 Hb_152453_010 Hb_000140_490--Hb_152453_010 Hb_000365_160 Hb_000365_160 Hb_000140_490--Hb_000365_160 Hb_012132_040 Hb_012132_040 Hb_000140_490--Hb_012132_040 Hb_000198_070 Hb_000198_070 Hb_000140_490--Hb_000198_070 Hb_000009_650 Hb_000009_650 Hb_000140_490--Hb_000009_650 Hb_171554_090 Hb_171554_090 Hb_003849_080--Hb_171554_090 Hb_175612_010 Hb_175612_010 Hb_003849_080--Hb_175612_010 Hb_004525_100 Hb_004525_100 Hb_003849_080--Hb_004525_100 Hb_009801_010 Hb_009801_010 Hb_003849_080--Hb_009801_010 Hb_003849_080--Hb_004241_040 Hb_006261_040 Hb_006261_040 Hb_003849_080--Hb_006261_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.1194 3.32011 41.8443 7.0247 48.3042 124.649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.49542 48.5384 1.36836 4.4294 0

CAGE analysis