Hb_003666_040

Information

Type -
Description -
Location Contig3666: 66871-67350
Sequence    

Annotation

kegg
ID tcc:TCM_000503
description Synechocystis YCF37
nr
ID XP_012079128.1
description PREDICTED: uncharacterized protein LOC105639624 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DHK7
description Synechocystis YCF37 OS=Theobroma cacao GN=TCM_000503 PE=4 SV=1
Gene Ontology
ID GO:0009535
description synechocystis ycf37

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003666_040 0.0 - - PREDICTED: uncharacterized protein LOC105639624 [Jatropha curcas]
2 Hb_001790_030 0.1325549018 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Jatropha curcas]
3 Hb_025194_060 0.1525216409 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_000877_080 0.1531395972 - - PREDICTED: uncharacterized protein LOC105640901 [Jatropha curcas]
5 Hb_001712_020 0.1558893684 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
6 Hb_000638_160 0.1570568823 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
7 Hb_005846_030 0.1579692057 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
8 Hb_001811_160 0.1584382646 - - PREDICTED: probable glycosyltransferase At5g03795 [Eucalyptus grandis]
9 Hb_000176_010 0.159279401 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
10 Hb_000164_140 0.1592865777 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
11 Hb_002150_130 0.1599941067 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
12 Hb_000627_300 0.1620228197 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
13 Hb_009178_070 0.1626347189 - - PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Jatropha curcas]
14 Hb_003994_160 0.1677557127 - - PREDICTED: uncharacterized protein LOC105131691 isoform X5 [Populus euphratica]
15 Hb_000487_260 0.1677956243 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
16 Hb_014834_130 0.1682152209 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
17 Hb_002171_030 0.1685808993 - - plastid acyl-ACP thioesterase [Vernicia fordii]
18 Hb_000167_050 0.1690554942 - - PREDICTED: uncharacterized protein LOC105641106 [Jatropha curcas]
19 Hb_000627_260 0.1699643239 - - chloride channel clc, putative [Ricinus communis]
20 Hb_001946_160 0.1711568573 - - putative chaperon P13.9 [Castanea sativa]

Gene co-expression network

sample Hb_003666_040 Hb_003666_040 Hb_001790_030 Hb_001790_030 Hb_003666_040--Hb_001790_030 Hb_025194_060 Hb_025194_060 Hb_003666_040--Hb_025194_060 Hb_000877_080 Hb_000877_080 Hb_003666_040--Hb_000877_080 Hb_001712_020 Hb_001712_020 Hb_003666_040--Hb_001712_020 Hb_000638_160 Hb_000638_160 Hb_003666_040--Hb_000638_160 Hb_005846_030 Hb_005846_030 Hb_003666_040--Hb_005846_030 Hb_003813_020 Hb_003813_020 Hb_001790_030--Hb_003813_020 Hb_000984_240 Hb_000984_240 Hb_001790_030--Hb_000984_240 Hb_003349_030 Hb_003349_030 Hb_001790_030--Hb_003349_030 Hb_001790_030--Hb_005846_030 Hb_001790_030--Hb_001712_020 Hb_000254_140 Hb_000254_140 Hb_001790_030--Hb_000254_140 Hb_021650_040 Hb_021650_040 Hb_025194_060--Hb_021650_040 Hb_001946_160 Hb_001946_160 Hb_025194_060--Hb_001946_160 Hb_003304_030 Hb_003304_030 Hb_025194_060--Hb_003304_030 Hb_019053_060 Hb_019053_060 Hb_025194_060--Hb_019053_060 Hb_005127_030 Hb_005127_030 Hb_025194_060--Hb_005127_030 Hb_005539_010 Hb_005539_010 Hb_025194_060--Hb_005539_010 Hb_001056_030 Hb_001056_030 Hb_000877_080--Hb_001056_030 Hb_000877_080--Hb_001712_020 Hb_007827_010 Hb_007827_010 Hb_000877_080--Hb_007827_010 Hb_001318_260 Hb_001318_260 Hb_000877_080--Hb_001318_260 Hb_002872_050 Hb_002872_050 Hb_000877_080--Hb_002872_050 Hb_000877_080--Hb_003349_030 Hb_001712_020--Hb_005846_030 Hb_011689_120 Hb_011689_120 Hb_001712_020--Hb_011689_120 Hb_006846_150 Hb_006846_150 Hb_001712_020--Hb_006846_150 Hb_014834_130 Hb_014834_130 Hb_001712_020--Hb_014834_130 Hb_000317_260 Hb_000317_260 Hb_001712_020--Hb_000317_260 Hb_000167_050 Hb_000167_050 Hb_000638_160--Hb_000167_050 Hb_000638_160--Hb_005846_030 Hb_000638_160--Hb_014834_130 Hb_000638_160--Hb_011689_120 Hb_000622_240 Hb_000622_240 Hb_000638_160--Hb_000622_240 Hb_000462_090 Hb_000462_090 Hb_000638_160--Hb_000462_090 Hb_007632_170 Hb_007632_170 Hb_005846_030--Hb_007632_170 Hb_005725_220 Hb_005725_220 Hb_005846_030--Hb_005725_220 Hb_000164_140 Hb_000164_140 Hb_005846_030--Hb_000164_140 Hb_005846_030--Hb_000167_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.4576 2.32803 19.4312 16.8366 12.0548 6.13117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0824 25.0501 5.30606 2.77884 34.8969

CAGE analysis