Hb_003666_070

Information

Type -
Description -
Location Contig3666: 78801-81504
Sequence    

Annotation

kegg
ID pop:POPTR_0007s12050g
description POPTRDRAFT_764645; hypothetical protein
nr
ID XP_012079126.1
description PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
swissprot
ID Q94A73
description BTB/POZ domain-containing protein At5g66560 OS=Arabidopsis thaliana GN=At5g66560 PE=2 SV=2
trembl
ID A0A067KHV3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12296 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37712: 78717-78902 , PASA_asmbl_37713: 78968-81635
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003666_070 0.0 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
2 Hb_000120_340 0.0695598077 - - Cucumisin precursor, putative [Ricinus communis]
3 Hb_005675_050 0.0800614576 - - alpha-glucosidase, putative [Ricinus communis]
4 Hb_168918_010 0.0901273519 - - pectin acetylesterase, putative [Ricinus communis]
5 Hb_004592_010 0.0924305465 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b-like [Jatropha curcas]
6 Hb_007632_160 0.0963261371 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011671_050 0.0999501487 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
8 Hb_121313_010 0.1027413463 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
9 Hb_004122_010 0.1028902694 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
10 Hb_001514_030 0.1056000219 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
11 Hb_004218_140 0.1061600473 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Jatropha curcas]
12 Hb_008304_010 0.1064233144 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
13 Hb_001157_050 0.1080379091 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
14 Hb_128196_010 0.1104308243 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000418_170 0.1108157757 - - PREDICTED: ABC transporter C family member 12-like isoform X4 [Populus euphratica]
16 Hb_000086_470 0.114811757 - - hypothetical protein JCGZ_17645 [Jatropha curcas]
17 Hb_000739_170 0.1154629624 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
18 Hb_000627_040 0.1159560859 - - leucine-rich repeat protein, putative [Ricinus communis]
19 Hb_001269_060 0.1170814637 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
20 Hb_070498_010 0.1205181919 - - receptor kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003666_070 Hb_003666_070 Hb_000120_340 Hb_000120_340 Hb_003666_070--Hb_000120_340 Hb_005675_050 Hb_005675_050 Hb_003666_070--Hb_005675_050 Hb_168918_010 Hb_168918_010 Hb_003666_070--Hb_168918_010 Hb_004592_010 Hb_004592_010 Hb_003666_070--Hb_004592_010 Hb_007632_160 Hb_007632_160 Hb_003666_070--Hb_007632_160 Hb_011671_050 Hb_011671_050 Hb_003666_070--Hb_011671_050 Hb_000086_470 Hb_000086_470 Hb_000120_340--Hb_000086_470 Hb_019973_010 Hb_019973_010 Hb_000120_340--Hb_019973_010 Hb_000120_340--Hb_007632_160 Hb_000120_340--Hb_011671_050 Hb_007237_020 Hb_007237_020 Hb_000120_340--Hb_007237_020 Hb_004122_010 Hb_004122_010 Hb_005675_050--Hb_004122_010 Hb_005675_050--Hb_007632_160 Hb_000739_170 Hb_000739_170 Hb_005675_050--Hb_000739_170 Hb_003097_130 Hb_003097_130 Hb_005675_050--Hb_003097_130 Hb_000418_170 Hb_000418_170 Hb_005675_050--Hb_000418_170 Hb_001514_030 Hb_001514_030 Hb_168918_010--Hb_001514_030 Hb_007218_040 Hb_007218_040 Hb_168918_010--Hb_007218_040 Hb_168918_010--Hb_004122_010 Hb_005976_110 Hb_005976_110 Hb_168918_010--Hb_005976_110 Hb_004037_040 Hb_004037_040 Hb_168918_010--Hb_004037_040 Hb_019570_010 Hb_019570_010 Hb_004592_010--Hb_019570_010 Hb_005730_110 Hb_005730_110 Hb_004592_010--Hb_005730_110 Hb_008304_010 Hb_008304_010 Hb_004592_010--Hb_008304_010 Hb_000732_220 Hb_000732_220 Hb_004592_010--Hb_000732_220 Hb_000359_180 Hb_000359_180 Hb_004592_010--Hb_000359_180 Hb_001157_050 Hb_001157_050 Hb_007632_160--Hb_001157_050 Hb_000418_110 Hb_000418_110 Hb_007632_160--Hb_000418_110 Hb_007632_160--Hb_000086_470 Hb_007632_160--Hb_004122_010 Hb_002518_040 Hb_002518_040 Hb_011671_050--Hb_002518_040 Hb_001439_050 Hb_001439_050 Hb_011671_050--Hb_001439_050 Hb_001511_210 Hb_001511_210 Hb_011671_050--Hb_001511_210 Hb_011671_050--Hb_007632_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.378699 1.31962 14.2896 10.7968 0.0232402 0.00707194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0183621 0.0722437 0.110096 1.99149 6.38296

CAGE analysis