Hb_003667_020

Information

Type -
Description -
Location Contig3667: 38473-39405
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06070g
description POPTRDRAFT_767978; hypothetical protein
nr
ID ADK13073.1
description conserved hypothetical protein 16 [Hevea brasiliensis]
swissprot
ID Q9LMM6
description Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2 SV=1
trembl
ID D9J004
description Putative uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37714: 38488-39505
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003667_020 0.0 - - conserved hypothetical protein 16 [Hevea brasiliensis]
2 Hb_001862_030 0.1097440624 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
3 Hb_001541_190 0.1120048924 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
4 Hb_001862_050 0.1294405373 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
5 Hb_000165_090 0.1346272809 - - PREDICTED: protein MID1-COMPLEMENTING ACTIVITY 2-like [Jatropha curcas]
6 Hb_000069_300 0.1366365079 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
7 Hb_000260_610 0.1401069967 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
8 Hb_001307_020 0.1469236433 - - electron carrier, putative [Ricinus communis]
9 Hb_002463_050 0.1534975008 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006060_010 0.1585625082 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
11 Hb_008250_020 0.1601744664 - - PREDICTED: U-box domain-containing protein 15-like isoform X1 [Jatropha curcas]
12 Hb_002965_160 0.1603611231 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
13 Hb_000175_300 0.160791727 - - PREDICTED: uncharacterized protein LOC105634858 [Jatropha curcas]
14 Hb_001638_120 0.1641304535 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
15 Hb_013344_010 0.1654652489 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
16 Hb_008511_040 0.1688595261 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
17 Hb_000890_020 0.1735775491 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
18 Hb_000030_020 0.1741448998 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
19 Hb_004712_090 0.1753788455 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
20 Hb_001188_050 0.1761098064 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003667_020 Hb_003667_020 Hb_001862_030 Hb_001862_030 Hb_003667_020--Hb_001862_030 Hb_001541_190 Hb_001541_190 Hb_003667_020--Hb_001541_190 Hb_001862_050 Hb_001862_050 Hb_003667_020--Hb_001862_050 Hb_000165_090 Hb_000165_090 Hb_003667_020--Hb_000165_090 Hb_000069_300 Hb_000069_300 Hb_003667_020--Hb_000069_300 Hb_000260_610 Hb_000260_610 Hb_003667_020--Hb_000260_610 Hb_002463_050 Hb_002463_050 Hb_001862_030--Hb_002463_050 Hb_001862_030--Hb_000165_090 Hb_000809_130 Hb_000809_130 Hb_001862_030--Hb_000809_130 Hb_001862_030--Hb_001541_190 Hb_001307_020 Hb_001307_020 Hb_001862_030--Hb_001307_020 Hb_001541_190--Hb_000069_300 Hb_001541_190--Hb_001307_020 Hb_000175_300 Hb_000175_300 Hb_001541_190--Hb_000175_300 Hb_001638_120 Hb_001638_120 Hb_001541_190--Hb_001638_120 Hb_004970_070 Hb_004970_070 Hb_001541_190--Hb_004970_070 Hb_002965_160 Hb_002965_160 Hb_001862_050--Hb_002965_160 Hb_003020_190 Hb_003020_190 Hb_001862_050--Hb_003020_190 Hb_004129_060 Hb_004129_060 Hb_001862_050--Hb_004129_060 Hb_006133_020 Hb_006133_020 Hb_001862_050--Hb_006133_020 Hb_001862_050--Hb_000069_300 Hb_047659_010 Hb_047659_010 Hb_001862_050--Hb_047659_010 Hb_005245_140 Hb_005245_140 Hb_000165_090--Hb_005245_140 Hb_000030_020 Hb_000030_020 Hb_000165_090--Hb_000030_020 Hb_000165_090--Hb_000069_300 Hb_008511_040 Hb_008511_040 Hb_000165_090--Hb_008511_040 Hb_000069_300--Hb_008511_040 Hb_000069_300--Hb_006133_020 Hb_001141_050 Hb_001141_050 Hb_000069_300--Hb_001141_050 Hb_001922_110 Hb_001922_110 Hb_000069_300--Hb_001922_110 Hb_013344_010 Hb_013344_010 Hb_000260_610--Hb_013344_010 Hb_006060_010 Hb_006060_010 Hb_000260_610--Hb_006060_010 Hb_007545_110 Hb_007545_110 Hb_000260_610--Hb_007545_110 Hb_002400_050 Hb_002400_050 Hb_000260_610--Hb_002400_050 Hb_004920_050 Hb_004920_050 Hb_000260_610--Hb_004920_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9295 105.309 357.491 216.246 30.7998 16.7233
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.63956 11.1315 4.61978 17.5173 52.6513

CAGE analysis