Hb_003669_010

Information

Type -
Description -
Location Contig3669: 15116-27631
Sequence    

Annotation

kegg
ID pop:POPTR_0006s26270g
description POPTRDRAFT_654065; hypothetical protein
nr
ID XP_011019720.1
description PREDICTED: psbP domain-containing protein 5, chloroplastic [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9H9F5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s26270g PE=4 SV=2
Gene Ontology
ID GO:0034357
description psbp domain-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37717: 19179-19618
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003669_010 0.0 - - PREDICTED: psbP domain-containing protein 5, chloroplastic [Populus euphratica]
2 Hb_045770_010 0.1285978241 - - ER lumen protein retaining receptor [Populus trichocarpa]
3 Hb_003758_020 0.1404336529 - - UGTPg34 [Panax ginseng]
4 Hb_000004_010 0.1462431785 - - hypothetical protein Csa_6G120400 [Cucumis sativus]
5 Hb_008566_040 0.1483259407 - - PREDICTED: uncharacterized protein LOC105647590 isoform X1 [Jatropha curcas]
6 Hb_002960_150 0.1521686417 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
7 Hb_003020_210 0.1543661058 - - Structural maintenance of chromosomes 2-2 -like protein [Gossypium arboreum]
8 Hb_010368_050 0.1564137227 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
9 Hb_000544_030 0.1572047162 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000086_410 0.158912202 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
11 Hb_000362_180 0.1589507011 - - Pdap1 [Gossypium arboreum]
12 Hb_000539_050 0.1623657851 - - bile acid:sodium symporter, putative [Ricinus communis]
13 Hb_000684_260 0.1626704235 - - PREDICTED: probable DNA helicase MCM8 isoform X2 [Jatropha curcas]
14 Hb_000170_200 0.1628141903 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
15 Hb_124373_010 0.1658400113 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
16 Hb_074449_010 0.166307852 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
17 Hb_003935_060 0.1671696115 - - PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Jatropha curcas]
18 Hb_010883_140 0.1672716393 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
19 Hb_000622_350 0.1703927146 - - PREDICTED: protein ABIL1 [Jatropha curcas]
20 Hb_001951_130 0.1721606621 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003669_010 Hb_003669_010 Hb_045770_010 Hb_045770_010 Hb_003669_010--Hb_045770_010 Hb_003758_020 Hb_003758_020 Hb_003669_010--Hb_003758_020 Hb_000004_010 Hb_000004_010 Hb_003669_010--Hb_000004_010 Hb_008566_040 Hb_008566_040 Hb_003669_010--Hb_008566_040 Hb_002960_150 Hb_002960_150 Hb_003669_010--Hb_002960_150 Hb_003020_210 Hb_003020_210 Hb_003669_010--Hb_003020_210 Hb_002660_150 Hb_002660_150 Hb_045770_010--Hb_002660_150 Hb_169631_010 Hb_169631_010 Hb_045770_010--Hb_169631_010 Hb_000022_200 Hb_000022_200 Hb_045770_010--Hb_000022_200 Hb_009049_020 Hb_009049_020 Hb_045770_010--Hb_009049_020 Hb_000170_200 Hb_000170_200 Hb_045770_010--Hb_000170_200 Hb_008120_010 Hb_008120_010 Hb_045770_010--Hb_008120_010 Hb_000123_270 Hb_000123_270 Hb_003758_020--Hb_000123_270 Hb_001427_020 Hb_001427_020 Hb_003758_020--Hb_001427_020 Hb_003758_020--Hb_003020_210 Hb_010883_140 Hb_010883_140 Hb_003758_020--Hb_010883_140 Hb_000086_410 Hb_000086_410 Hb_003758_020--Hb_000086_410 Hb_000720_080 Hb_000720_080 Hb_000004_010--Hb_000720_080 Hb_001747_030 Hb_001747_030 Hb_000004_010--Hb_001747_030 Hb_000016_060 Hb_000016_060 Hb_000004_010--Hb_000016_060 Hb_007390_020 Hb_007390_020 Hb_000004_010--Hb_007390_020 Hb_005527_020 Hb_005527_020 Hb_000004_010--Hb_005527_020 Hb_000765_060 Hb_000765_060 Hb_008566_040--Hb_000765_060 Hb_003935_060 Hb_003935_060 Hb_008566_040--Hb_003935_060 Hb_000684_260 Hb_000684_260 Hb_008566_040--Hb_000684_260 Hb_000173_060 Hb_000173_060 Hb_008566_040--Hb_000173_060 Hb_008566_040--Hb_002960_150 Hb_000622_350 Hb_000622_350 Hb_008566_040--Hb_000622_350 Hb_000916_070 Hb_000916_070 Hb_002960_150--Hb_000916_070 Hb_001085_260 Hb_001085_260 Hb_002960_150--Hb_001085_260 Hb_124373_010 Hb_124373_010 Hb_002960_150--Hb_124373_010 Hb_007017_080 Hb_007017_080 Hb_002960_150--Hb_007017_080 Hb_000622_130 Hb_000622_130 Hb_002960_150--Hb_000622_130 Hb_010368_050 Hb_010368_050 Hb_002960_150--Hb_010368_050 Hb_003020_210--Hb_010368_050 Hb_003020_210--Hb_000123_270 Hb_083380_020 Hb_083380_020 Hb_003020_210--Hb_083380_020 Hb_000539_050 Hb_000539_050 Hb_003020_210--Hb_000539_050 Hb_000215_090 Hb_000215_090 Hb_003020_210--Hb_000215_090 Hb_005000_330 Hb_005000_330 Hb_003020_210--Hb_005000_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.2166 0.449564 4.31201 7.69613 1.54898 3.4151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.14642 1.85816 0.699799 1.29503 2.1005

CAGE analysis