Hb_003669_020

Information

Type -
Description -
Location Contig3669: 33060-36985
Sequence    

Annotation

kegg
ID rcu:RCOM_0804290
description hypothetical protein
nr
ID XP_011019719.1
description PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9RS86
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0804290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37719: 33082-36978 , PASA_asmbl_37720: 33082-36978 , PASA_asmbl_37721: 35421-35553
cDNA
(Sanger)
(ID:Location)		 010_K13.ab1: 36434-36970 , 038_P06.ab1: 36213-36978

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003669_020 0.0 - - PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]
2 Hb_005843_140 0.0678929981 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
3 Hb_044653_040 0.0720447115 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
4 Hb_006198_070 0.0795749809 - - pantoate-beta-alanine ligase, putative [Ricinus communis]
5 Hb_000310_020 0.0808646556 - - hypothetical protein JCGZ_20797 [Jatropha curcas]
6 Hb_011512_070 0.0841509739 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
7 Hb_000505_130 0.0845635961 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
8 Hb_001931_010 0.0854336751 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
9 Hb_006355_040 0.0863159461 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
10 Hb_000419_020 0.0881015953 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_002027_350 0.0894911834 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
12 Hb_000161_130 0.0895190965 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
13 Hb_000099_150 0.089995054 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
14 Hb_007304_090 0.090567396 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
15 Hb_000155_160 0.0918860764 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
16 Hb_003124_150 0.0923673161 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
17 Hb_002534_100 0.0931578806 - - PREDICTED: malate dehydrogenase, chloroplastic [Jatropha curcas]
18 Hb_000164_100 0.0966550145 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
19 Hb_000221_190 0.0983669617 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
20 Hb_158445_010 0.099251341 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003669_020 Hb_003669_020 Hb_005843_140 Hb_005843_140 Hb_003669_020--Hb_005843_140 Hb_044653_040 Hb_044653_040 Hb_003669_020--Hb_044653_040 Hb_006198_070 Hb_006198_070 Hb_003669_020--Hb_006198_070 Hb_000310_020 Hb_000310_020 Hb_003669_020--Hb_000310_020 Hb_011512_070 Hb_011512_070 Hb_003669_020--Hb_011512_070 Hb_000505_130 Hb_000505_130 Hb_003669_020--Hb_000505_130 Hb_005843_140--Hb_006198_070 Hb_005843_140--Hb_044653_040 Hb_002968_040 Hb_002968_040 Hb_005843_140--Hb_002968_040 Hb_006355_040 Hb_006355_040 Hb_005843_140--Hb_006355_040 Hb_005843_140--Hb_000505_130 Hb_044653_040--Hb_000505_130 Hb_002534_100 Hb_002534_100 Hb_044653_040--Hb_002534_100 Hb_044653_040--Hb_000310_020 Hb_002303_020 Hb_002303_020 Hb_044653_040--Hb_002303_020 Hb_026527_050 Hb_026527_050 Hb_006198_070--Hb_026527_050 Hb_003540_240 Hb_003540_240 Hb_006198_070--Hb_003540_240 Hb_006198_070--Hb_006355_040 Hb_004057_010 Hb_004057_010 Hb_006198_070--Hb_004057_010 Hb_000310_020--Hb_000505_130 Hb_000221_190 Hb_000221_190 Hb_000310_020--Hb_000221_190 Hb_000161_130 Hb_000161_130 Hb_000310_020--Hb_000161_130 Hb_006615_240 Hb_006615_240 Hb_000310_020--Hb_006615_240 Hb_004324_090 Hb_004324_090 Hb_000310_020--Hb_004324_090 Hb_003124_150 Hb_003124_150 Hb_000310_020--Hb_003124_150 Hb_000656_240 Hb_000656_240 Hb_011512_070--Hb_000656_240 Hb_002226_060 Hb_002226_060 Hb_011512_070--Hb_002226_060 Hb_000529_030 Hb_000529_030 Hb_011512_070--Hb_000529_030 Hb_010098_050 Hb_010098_050 Hb_011512_070--Hb_010098_050 Hb_007304_090 Hb_007304_090 Hb_011512_070--Hb_007304_090 Hb_000205_090 Hb_000205_090 Hb_011512_070--Hb_000205_090 Hb_001931_010 Hb_001931_010 Hb_000505_130--Hb_001931_010 Hb_000505_130--Hb_000221_190 Hb_000505_130--Hb_003124_150 Hb_006326_040 Hb_006326_040 Hb_000505_130--Hb_006326_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.2444 29.5963 46.7799 30.2699 14.469 19.4506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.9494 87.7442 36.0546 31.1079 38.6548

CAGE analysis