Hb_003670_030

Information

Type -
Description -
Location Contig3670: 32950-33618
Sequence    

Annotation

kegg
ID rcu:RCOM_0150470
description Calcium-binding allergen Ole e, putative
nr
ID XP_012085969.1
description PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
swissprot
ID Q9SS31
description Probable calcium-binding protein CML36 OS=Arabidopsis thaliana GN=CML36 PE=2 SV=1
trembl
ID A0A067JTX4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22464 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml36

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37769: 32737-33773
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003670_030 0.0 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
2 Hb_005064_070 0.0884618324 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
3 Hb_056196_060 0.088659105 - - hexokinase [Manihot esculenta]
4 Hb_000056_080 0.1131963698 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
5 Hb_002325_060 0.1158363652 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
6 Hb_000375_060 0.1206132819 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
7 Hb_000000_480 0.1214833666 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
8 Hb_002374_270 0.1222215361 - - conserved hypothetical protein [Ricinus communis]
9 Hb_018790_050 0.1244564508 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
10 Hb_000735_140 0.1249980402 - - 3-glucanase family protein [Populus trichocarpa]
11 Hb_000735_080 0.1258802181 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
12 Hb_008112_010 0.1276831613 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
13 Hb_002349_030 0.1305092928 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002849_070 0.132451147 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
15 Hb_001729_020 0.1343967865 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
16 Hb_054865_050 0.1350923935 - - calcium-dependent protein kinase, putative [Ricinus communis]
17 Hb_005054_020 0.1357908681 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
18 Hb_000035_050 0.1363169496 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
19 Hb_001329_080 0.1372053111 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
20 Hb_048476_040 0.1404558367 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]

Gene co-expression network

sample Hb_003670_030 Hb_003670_030 Hb_005064_070 Hb_005064_070 Hb_003670_030--Hb_005064_070 Hb_056196_060 Hb_056196_060 Hb_003670_030--Hb_056196_060 Hb_000056_080 Hb_000056_080 Hb_003670_030--Hb_000056_080 Hb_002325_060 Hb_002325_060 Hb_003670_030--Hb_002325_060 Hb_000375_060 Hb_000375_060 Hb_003670_030--Hb_000375_060 Hb_000000_480 Hb_000000_480 Hb_003670_030--Hb_000000_480 Hb_048476_040 Hb_048476_040 Hb_005064_070--Hb_048476_040 Hb_000329_790 Hb_000329_790 Hb_005064_070--Hb_000329_790 Hb_054865_050 Hb_054865_050 Hb_005064_070--Hb_054865_050 Hb_009449_100 Hb_009449_100 Hb_005064_070--Hb_009449_100 Hb_005064_070--Hb_000375_060 Hb_018790_050 Hb_018790_050 Hb_056196_060--Hb_018790_050 Hb_000035_050 Hb_000035_050 Hb_056196_060--Hb_000035_050 Hb_008112_010 Hb_008112_010 Hb_056196_060--Hb_008112_010 Hb_000009_200 Hb_000009_200 Hb_056196_060--Hb_000009_200 Hb_005714_100 Hb_005714_100 Hb_056196_060--Hb_005714_100 Hb_002849_070 Hb_002849_070 Hb_000056_080--Hb_002849_070 Hb_000200_170 Hb_000200_170 Hb_000056_080--Hb_000200_170 Hb_000203_270 Hb_000203_270 Hb_000056_080--Hb_000203_270 Hb_000735_140 Hb_000735_140 Hb_000056_080--Hb_000735_140 Hb_003849_190 Hb_003849_190 Hb_000056_080--Hb_003849_190 Hb_000622_330 Hb_000622_330 Hb_002325_060--Hb_000622_330 Hb_000922_320 Hb_000922_320 Hb_002325_060--Hb_000922_320 Hb_004218_120 Hb_004218_120 Hb_002325_060--Hb_004218_120 Hb_005054_020 Hb_005054_020 Hb_002325_060--Hb_005054_020 Hb_002281_010 Hb_002281_010 Hb_002325_060--Hb_002281_010 Hb_000979_140 Hb_000979_140 Hb_000375_060--Hb_000979_140 Hb_000375_060--Hb_054865_050 Hb_001729_020 Hb_001729_020 Hb_000375_060--Hb_001729_020 Hb_000098_180 Hb_000098_180 Hb_000375_060--Hb_000098_180 Hb_000853_330 Hb_000853_330 Hb_000375_060--Hb_000853_330 Hb_004218_130 Hb_004218_130 Hb_000000_480--Hb_004218_130 Hb_012762_040 Hb_012762_040 Hb_000000_480--Hb_012762_040 Hb_000000_480--Hb_000622_330 Hb_000000_480--Hb_000098_180 Hb_000928_120 Hb_000928_120 Hb_000000_480--Hb_000928_120 Hb_029253_010 Hb_029253_010 Hb_000000_480--Hb_029253_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.7993 284.341 314.189 354.835 18.2275 20.2452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.7998 68.1135 46.1905 142.393 103.681

CAGE analysis