Hb_003671_010

Information

Type -
Description -
Location Contig3671: 78722-83061
Sequence    

Annotation

kegg
ID rcu:RCOM_0104790
description Protein transport protein SFT2, putative
nr
ID XP_012078472.1
description PREDICTED: protein transport protein SFT2 isoform X1 [Jatropha curcas]
swissprot
ID P38166
description Protein transport protein SFT2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFT2 PE=1 SV=1
trembl
ID A0A067KLD4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13164 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein transport protein sft2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37770: 78726-83090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003671_010 0.0 - - PREDICTED: protein transport protein SFT2 isoform X1 [Jatropha curcas]
2 Hb_033286_010 0.0650743697 - - PREDICTED: probable beta-1,3-galactosyltransferase 14 [Jatropha curcas]
3 Hb_003683_020 0.0707413219 - - serine/threonine protein kinase, putative [Ricinus communis]
4 Hb_000696_010 0.0710408812 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
5 Hb_002785_050 0.0763814188 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
6 Hb_000260_330 0.0780757232 - - PREDICTED: uncharacterized protein LOC103438625 [Malus domestica]
7 Hb_001882_050 0.0787329449 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
8 Hb_003528_030 0.0812635015 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
9 Hb_001191_110 0.0822615939 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
10 Hb_000146_040 0.0838788371 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
11 Hb_000352_300 0.0843555306 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
12 Hb_000130_180 0.0865445305 - - PREDICTED: GPI inositol-deacylase-like isoform X2 [Jatropha curcas]
13 Hb_000163_090 0.0872443316 - - gamma-tubulin complex component, putative [Ricinus communis]
14 Hb_002375_040 0.0879419904 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
15 Hb_000184_070 0.0879675325 - - PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
16 Hb_005797_010 0.0881104158 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
17 Hb_000159_090 0.0909257615 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
18 Hb_001009_320 0.0916656351 - - PREDICTED: uncharacterized protein LOC105640250 [Jatropha curcas]
19 Hb_002811_180 0.0922572186 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006856_010 0.0925769764 - - hypothetical protein CISIN_1g019592mg [Citrus sinensis]

Gene co-expression network

sample Hb_003671_010 Hb_003671_010 Hb_033286_010 Hb_033286_010 Hb_003671_010--Hb_033286_010 Hb_003683_020 Hb_003683_020 Hb_003671_010--Hb_003683_020 Hb_000696_010 Hb_000696_010 Hb_003671_010--Hb_000696_010 Hb_002785_050 Hb_002785_050 Hb_003671_010--Hb_002785_050 Hb_000260_330 Hb_000260_330 Hb_003671_010--Hb_000260_330 Hb_001882_050 Hb_001882_050 Hb_003671_010--Hb_001882_050 Hb_000146_040 Hb_000146_040 Hb_033286_010--Hb_000146_040 Hb_001009_320 Hb_001009_320 Hb_033286_010--Hb_001009_320 Hb_005946_210 Hb_005946_210 Hb_033286_010--Hb_005946_210 Hb_000522_170 Hb_000522_170 Hb_033286_010--Hb_000522_170 Hb_000006_010 Hb_000006_010 Hb_033286_010--Hb_000006_010 Hb_012498_010 Hb_012498_010 Hb_003683_020--Hb_012498_010 Hb_010142_020 Hb_010142_020 Hb_003683_020--Hb_010142_020 Hb_013399_020 Hb_013399_020 Hb_003683_020--Hb_013399_020 Hb_003528_030 Hb_003528_030 Hb_003683_020--Hb_003528_030 Hb_000159_090 Hb_000159_090 Hb_003683_020--Hb_000159_090 Hb_003683_020--Hb_000260_330 Hb_001191_110 Hb_001191_110 Hb_000696_010--Hb_001191_110 Hb_000696_010--Hb_000146_040 Hb_002375_040 Hb_002375_040 Hb_000696_010--Hb_002375_040 Hb_005797_010 Hb_005797_010 Hb_000696_010--Hb_005797_010 Hb_000696_010--Hb_033286_010 Hb_002273_120 Hb_002273_120 Hb_002785_050--Hb_002273_120 Hb_009529_030 Hb_009529_030 Hb_002785_050--Hb_009529_030 Hb_032050_040 Hb_032050_040 Hb_002785_050--Hb_032050_040 Hb_000830_030 Hb_000830_030 Hb_002785_050--Hb_000830_030 Hb_002785_050--Hb_001882_050 Hb_002785_050--Hb_000260_330 Hb_000025_180 Hb_000025_180 Hb_000260_330--Hb_000025_180 Hb_028512_020 Hb_028512_020 Hb_000260_330--Hb_028512_020 Hb_000345_240 Hb_000345_240 Hb_000260_330--Hb_000345_240 Hb_002811_180 Hb_002811_180 Hb_000260_330--Hb_002811_180 Hb_000923_010 Hb_000923_010 Hb_000260_330--Hb_000923_010 Hb_001882_050--Hb_000260_330 Hb_001882_050--Hb_009529_030 Hb_001882_050--Hb_002273_120 Hb_001882_050--Hb_003683_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.88129 7.51176 11.4643 21.1547 17.0975 16.2702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.98017 9.48434 9.20533 13.8477 10.3131

CAGE analysis