Hb_003671_020

Information

Type -
Description -
Location Contig3671: 102221-106377
Sequence    

Annotation

kegg
ID rcu:RCOM_0104820
description calcineurin B, putative
nr
ID XP_002532178.1
description calcineurin B, putative [Ricinus communis]
swissprot
ID Q75LU8
description Calcineurin B-like protein 3 OS=Oryza sativa subsp. japonica GN=CBL3 PE=1 SV=1
trembl
ID B9T1Q9
description Calcineurin B, putative OS=Ricinus communis GN=RCOM_0104820 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcineurin b-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37771: 102274-106341
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003671_020 0.0 - - calcineurin B, putative [Ricinus communis]
2 Hb_000125_100 0.0568488769 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105635070 [Jatropha curcas]
3 Hb_003414_050 0.0611514116 - - PREDICTED: uncharacterized protein LOC105640180 isoform X3 [Jatropha curcas]
4 Hb_029388_030 0.0704586544 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
5 Hb_002375_070 0.0720262714 - - conserved hypothetical protein [Ricinus communis]
6 Hb_009615_070 0.0746113926 - - type X protein phosphatase-II [Populus trichocarpa]
7 Hb_000479_190 0.0773828162 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010174_020 0.0785417184 - - protein binding protein, putative [Ricinus communis]
9 Hb_000985_060 0.0827540206 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
10 Hb_092337_010 0.0839151532 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
11 Hb_001205_150 0.0861782032 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
12 Hb_007009_010 0.0881073079 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675 [Populus euphratica]
13 Hb_004102_110 0.0894118167 - - Monothiol glutaredoxin-4, putative [Ricinus communis]
14 Hb_003108_020 0.0896698332 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
15 Hb_000656_170 0.0901230762 - - lsm1, putative [Ricinus communis]
16 Hb_007113_070 0.0906548011 - - protein with unknown function [Ricinus communis]
17 Hb_000483_390 0.0909316298 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
18 Hb_001842_040 0.0909854493 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
19 Hb_000692_220 0.0920909291 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
20 Hb_004696_080 0.0940196203 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]

Gene co-expression network

sample Hb_003671_020 Hb_003671_020 Hb_000125_100 Hb_000125_100 Hb_003671_020--Hb_000125_100 Hb_003414_050 Hb_003414_050 Hb_003671_020--Hb_003414_050 Hb_029388_030 Hb_029388_030 Hb_003671_020--Hb_029388_030 Hb_002375_070 Hb_002375_070 Hb_003671_020--Hb_002375_070 Hb_009615_070 Hb_009615_070 Hb_003671_020--Hb_009615_070 Hb_000479_190 Hb_000479_190 Hb_003671_020--Hb_000479_190 Hb_092337_010 Hb_092337_010 Hb_000125_100--Hb_092337_010 Hb_000125_100--Hb_003414_050 Hb_001205_150 Hb_001205_150 Hb_000125_100--Hb_001205_150 Hb_000125_100--Hb_009615_070 Hb_000629_120 Hb_000629_120 Hb_000125_100--Hb_000629_120 Hb_003414_050--Hb_009615_070 Hb_000701_100 Hb_000701_100 Hb_003414_050--Hb_000701_100 Hb_000483_390 Hb_000483_390 Hb_003414_050--Hb_000483_390 Hb_007009_010 Hb_007009_010 Hb_003414_050--Hb_007009_010 Hb_000985_060 Hb_000985_060 Hb_029388_030--Hb_000985_060 Hb_114310_080 Hb_114310_080 Hb_029388_030--Hb_114310_080 Hb_033594_150 Hb_033594_150 Hb_029388_030--Hb_033594_150 Hb_029388_030--Hb_000479_190 Hb_152784_010 Hb_152784_010 Hb_029388_030--Hb_152784_010 Hb_004108_070 Hb_004108_070 Hb_002375_070--Hb_004108_070 Hb_011344_210 Hb_011344_210 Hb_002375_070--Hb_011344_210 Hb_000692_220 Hb_000692_220 Hb_002375_070--Hb_000692_220 Hb_000331_200 Hb_000331_200 Hb_002375_070--Hb_000331_200 Hb_002375_070--Hb_092337_010 Hb_023278_020 Hb_023278_020 Hb_009615_070--Hb_023278_020 Hb_003605_090 Hb_003605_090 Hb_009615_070--Hb_003605_090 Hb_009615_070--Hb_007009_010 Hb_004889_010 Hb_004889_010 Hb_009615_070--Hb_004889_010 Hb_004899_370 Hb_004899_370 Hb_009615_070--Hb_004899_370 Hb_089032_030 Hb_089032_030 Hb_009615_070--Hb_089032_030 Hb_001584_190 Hb_001584_190 Hb_000479_190--Hb_001584_190 Hb_000479_190--Hb_000985_060 Hb_003502_090 Hb_003502_090 Hb_000479_190--Hb_003502_090 Hb_003108_020 Hb_003108_020 Hb_000479_190--Hb_003108_020 Hb_000479_190--Hb_001205_150 Hb_000363_360 Hb_000363_360 Hb_000479_190--Hb_000363_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.7315 34.5066 31.078 77.2167 40.7003 68.4815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.5786 124.382 104.467 33.869 26.7122

CAGE analysis