Hb_003673_020

Information

Type -
Description -
Location Contig3673: 6206-11601
Sequence    

Annotation

kegg
ID rcu:RCOM_0254030
description DNA double-strand break repair rad50 ATPase, putative
nr
ID KDP27063.1
description hypothetical protein JCGZ_20998 [Jatropha curcas]
swissprot
ID O23144
description Proton pump-interactor 1 OS=Arabidopsis thaliana GN=PPI1 PE=1 SV=2
trembl
ID A0A067JW55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20998 PE=4 SV=1
Gene Ontology
ID GO:0005783
description proton pump-interactor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37772: 6188-10943
cDNA
(Sanger)
(ID:Location)		 045_H02.ab1: 7168-10358 , 048_N16.ab1: 6188-8591

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003673_020 0.0 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
2 Hb_035360_010 0.0665430674 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
3 Hb_000779_040 0.0796003929 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
4 Hb_000211_090 0.0802493912 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
5 Hb_000211_080 0.0832284508 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
6 Hb_000619_070 0.0965107231 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
7 Hb_003666_050 0.0988118669 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
8 Hb_003226_170 0.0992994874 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
9 Hb_004531_090 0.1030165382 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
10 Hb_000792_110 0.1031480648 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
11 Hb_010189_010 0.1034262513 - - -
12 Hb_000185_090 0.1042210701 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
13 Hb_174865_050 0.1047913006 - - PREDICTED: neuroguidin [Jatropha curcas]
14 Hb_061256_030 0.1056645188 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
15 Hb_000608_340 0.1059550543 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
16 Hb_172256_010 0.108252752 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
17 Hb_000016_180 0.1103389534 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
18 Hb_002918_070 0.1106266722 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
19 Hb_004102_130 0.1128448846 - - conserved hypothetical protein [Ricinus communis]
20 Hb_019871_020 0.1136154576 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]

Gene co-expression network

sample Hb_003673_020 Hb_003673_020 Hb_035360_010 Hb_035360_010 Hb_003673_020--Hb_035360_010 Hb_000779_040 Hb_000779_040 Hb_003673_020--Hb_000779_040 Hb_000211_090 Hb_000211_090 Hb_003673_020--Hb_000211_090 Hb_000211_080 Hb_000211_080 Hb_003673_020--Hb_000211_080 Hb_000619_070 Hb_000619_070 Hb_003673_020--Hb_000619_070 Hb_003666_050 Hb_003666_050 Hb_003673_020--Hb_003666_050 Hb_035360_010--Hb_000619_070 Hb_000792_110 Hb_000792_110 Hb_035360_010--Hb_000792_110 Hb_035360_010--Hb_000779_040 Hb_000608_340 Hb_000608_340 Hb_035360_010--Hb_000608_340 Hb_035360_010--Hb_000211_090 Hb_000890_220 Hb_000890_220 Hb_000779_040--Hb_000890_220 Hb_000779_040--Hb_000211_090 Hb_000779_040--Hb_000608_340 Hb_000779_040--Hb_000792_110 Hb_004531_090 Hb_004531_090 Hb_000779_040--Hb_004531_090 Hb_000211_090--Hb_000792_110 Hb_002918_070 Hb_002918_070 Hb_000211_090--Hb_002918_070 Hb_000211_090--Hb_000890_220 Hb_000211_090--Hb_003666_050 Hb_172256_010 Hb_172256_010 Hb_000211_080--Hb_172256_010 Hb_000211_080--Hb_000779_040 Hb_000211_080--Hb_000792_110 Hb_000211_080--Hb_035360_010 Hb_000211_080--Hb_000211_090 Hb_000619_070--Hb_000608_340 Hb_000619_070--Hb_000779_040 Hb_045502_010 Hb_045502_010 Hb_000619_070--Hb_045502_010 Hb_019871_020 Hb_019871_020 Hb_000619_070--Hb_019871_020 Hb_001195_030 Hb_001195_030 Hb_003666_050--Hb_001195_030 Hb_003666_050--Hb_000608_340 Hb_000181_310 Hb_000181_310 Hb_003666_050--Hb_000181_310 Hb_000185_090 Hb_000185_090 Hb_003666_050--Hb_000185_090 Hb_174865_050 Hb_174865_050 Hb_003666_050--Hb_174865_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
353.844 51.2361 40.1925 30.5842 459.036 435.232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
78.5748 34.5681 46.9985 52.2144 25.8501

CAGE analysis