Hb_003673_040

Information

Type -
Description -
Location Contig3673: 15689-23244
Sequence    

Annotation

kegg
ID pop:POPTR_0011s11930g
description POPTRDRAFT_568892; dynamin family protein
nr
ID XP_002317496.1
description dynamin family protein [Populus trichocarpa]
swissprot
ID F4HPR5
description Dynamin-related protein 5A OS=Arabidopsis thaliana GN=DRP5A PE=2 SV=1
trembl
ID B9HZT9
description Dynamin family protein OS=Populus trichocarpa GN=POPTR_0011s11930g PE=4 SV=1
Gene Ontology
ID GO:0000166
description dynamin-related protein 5a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003673_040 0.0 - - dynamin family protein [Populus trichocarpa]
2 Hb_021079_010 0.1889809107 - - PREDICTED: histone H2B-like [Populus euphratica]
3 Hb_000330_030 0.1960654457 - - PREDICTED: uncharacterized protein LOC105633814 [Jatropha curcas]
4 Hb_027298_030 0.2004510953 - - PREDICTED: histone H1-like [Jatropha curcas]
5 Hb_097218_020 0.2030960201 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
6 Hb_003181_060 0.2053458161 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
7 Hb_002631_300 0.2054640719 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
8 Hb_006384_010 0.2060873965 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_050959_010 0.206949018 - - -
10 Hb_153269_010 0.2156702772 - - hypothetical protein CICLE_v10029937mg [Citrus clementina]
11 Hb_001221_560 0.2156907435 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase 1B-like [Jatropha curcas]
12 Hb_000175_190 0.2172336533 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
13 Hb_000008_370 0.2213102927 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
14 Hb_011242_050 0.2217563673 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa [Jatropha curcas]
15 Hb_001767_060 0.2219823177 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
16 Hb_116420_010 0.2228834111 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
17 Hb_004449_180 0.2272165676 - - PREDICTED: SAC3 family protein 1 [Jatropha curcas]
18 Hb_001898_050 0.2290306631 - - PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis]
19 Hb_000186_270 0.2301702443 - - hypothetical protein JCGZ_02112 [Jatropha curcas]
20 Hb_000438_140 0.2301936023 - - hypothetical protein CISIN_1g018088mg [Citrus sinensis]

Gene co-expression network

sample Hb_003673_040 Hb_003673_040 Hb_021079_010 Hb_021079_010 Hb_003673_040--Hb_021079_010 Hb_000330_030 Hb_000330_030 Hb_003673_040--Hb_000330_030 Hb_027298_030 Hb_027298_030 Hb_003673_040--Hb_027298_030 Hb_097218_020 Hb_097218_020 Hb_003673_040--Hb_097218_020 Hb_003181_060 Hb_003181_060 Hb_003673_040--Hb_003181_060 Hb_002631_300 Hb_002631_300 Hb_003673_040--Hb_002631_300 Hb_000392_550 Hb_000392_550 Hb_021079_010--Hb_000392_550 Hb_021079_010--Hb_027298_030 Hb_002876_020 Hb_002876_020 Hb_021079_010--Hb_002876_020 Hb_003106_100 Hb_003106_100 Hb_021079_010--Hb_003106_100 Hb_021079_010--Hb_003181_060 Hb_000210_060 Hb_000210_060 Hb_021079_010--Hb_000210_060 Hb_001496_130 Hb_001496_130 Hb_000330_030--Hb_001496_130 Hb_012506_070 Hb_012506_070 Hb_000330_030--Hb_012506_070 Hb_000856_060 Hb_000856_060 Hb_000330_030--Hb_000856_060 Hb_000690_150 Hb_000690_150 Hb_000330_030--Hb_000690_150 Hb_050959_010 Hb_050959_010 Hb_000330_030--Hb_050959_010 Hb_027298_030--Hb_003181_060 Hb_004317_030 Hb_004317_030 Hb_027298_030--Hb_004317_030 Hb_000510_080 Hb_000510_080 Hb_027298_030--Hb_000510_080 Hb_006836_030 Hb_006836_030 Hb_027298_030--Hb_006836_030 Hb_000723_340 Hb_000723_340 Hb_027298_030--Hb_000723_340 Hb_001117_120 Hb_001117_120 Hb_097218_020--Hb_001117_120 Hb_002217_520 Hb_002217_520 Hb_097218_020--Hb_002217_520 Hb_153269_010 Hb_153269_010 Hb_097218_020--Hb_153269_010 Hb_001221_560 Hb_001221_560 Hb_097218_020--Hb_001221_560 Hb_097218_020--Hb_021079_010 Hb_001269_470 Hb_001269_470 Hb_003181_060--Hb_001269_470 Hb_027298_010 Hb_027298_010 Hb_003181_060--Hb_027298_010 Hb_001711_120 Hb_001711_120 Hb_003181_060--Hb_001711_120 Hb_003181_060--Hb_000392_550 Hb_003178_020 Hb_003178_020 Hb_002631_300--Hb_003178_020 Hb_001767_060 Hb_001767_060 Hb_002631_300--Hb_001767_060 Hb_000189_540 Hb_000189_540 Hb_002631_300--Hb_000189_540 Hb_101146_010 Hb_101146_010 Hb_002631_300--Hb_101146_010 Hb_000152_210 Hb_000152_210 Hb_002631_300--Hb_000152_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0498343 0.0330335 0.151944 0.177842 0.0222902 0.00695356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.101052 0.238553 0 0.110484 0.112793

CAGE analysis