Hb_003673_050

Information

Type -
Description -
Location Contig3673: 31472-32197
Sequence    

Annotation

kegg
ID pop:POPTR_0001s40990g
description hypothetical protein
nr
ID XP_006370246.1
description hypothetical protein POPTR_0001s40990g [Populus trichocarpa]
swissprot
ID Q5M750
description VQ motif-containing protein 4 OS=Arabidopsis thaliana GN=VQ4 PE=1 SV=1
trembl
ID B9N1G0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s40990g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003673_050 0.0 - - hypothetical protein POPTR_0001s40990g [Populus trichocarpa]
2 Hb_003998_010 0.1700652992 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
3 Hb_000453_100 0.1743179021 - - PREDICTED: metallothionein-like protein 1 [Sesamum indicum]
4 Hb_002541_020 0.1743893057 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
5 Hb_028207_060 0.1780376952 - - PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]
6 Hb_002213_040 0.1859112953 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
7 Hb_005694_010 0.1884702282 transcription factor TF Family: C2C2-Dof F-box family protein, putative isoform 1 [Theobroma cacao]
8 Hb_000152_370 0.1958008766 - - PREDICTED: uncharacterized protein LOC105648579 isoform X1 [Jatropha curcas]
9 Hb_000413_070 0.196827311 - - conserved hypothetical protein [Ricinus communis]
10 Hb_013358_090 0.1970092059 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
11 Hb_001481_160 0.2032096126 - - PREDICTED: RING-H2 finger protein ATL22-like [Populus euphratica]
12 Hb_006065_050 0.2110232205 transcription factor TF Family: AP2 PREDICTED: floral homeotic protein APETALA 2 isoform X1 [Jatropha curcas]
13 Hb_002818_050 0.213012972 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
14 Hb_002874_090 0.2136788962 - - PREDICTED: uncharacterized protein LOC105637452 [Jatropha curcas]
15 Hb_027760_070 0.2159637657 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
16 Hb_084513_010 0.216065268 - - PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]
17 Hb_013358_080 0.2168786847 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]
18 Hb_003910_010 0.2170633314 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
19 Hb_003813_080 0.2170658336 - - PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
20 Hb_002192_030 0.2179093635 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003673_050 Hb_003673_050 Hb_003998_010 Hb_003998_010 Hb_003673_050--Hb_003998_010 Hb_000453_100 Hb_000453_100 Hb_003673_050--Hb_000453_100 Hb_002541_020 Hb_002541_020 Hb_003673_050--Hb_002541_020 Hb_028207_060 Hb_028207_060 Hb_003673_050--Hb_028207_060 Hb_002213_040 Hb_002213_040 Hb_003673_050--Hb_002213_040 Hb_005694_010 Hb_005694_010 Hb_003673_050--Hb_005694_010 Hb_000588_080 Hb_000588_080 Hb_003998_010--Hb_000588_080 Hb_002995_040 Hb_002995_040 Hb_003998_010--Hb_002995_040 Hb_000318_040 Hb_000318_040 Hb_003998_010--Hb_000318_040 Hb_002874_090 Hb_002874_090 Hb_003998_010--Hb_002874_090 Hb_000413_070 Hb_000413_070 Hb_003998_010--Hb_000413_070 Hb_001059_130 Hb_001059_130 Hb_003998_010--Hb_001059_130 Hb_000011_190 Hb_000011_190 Hb_000453_100--Hb_000011_190 Hb_001486_070 Hb_001486_070 Hb_000453_100--Hb_001486_070 Hb_003203_020 Hb_003203_020 Hb_000453_100--Hb_003203_020 Hb_008177_030 Hb_008177_030 Hb_000453_100--Hb_008177_030 Hb_003430_060 Hb_003430_060 Hb_000453_100--Hb_003430_060 Hb_078477_050 Hb_078477_050 Hb_000453_100--Hb_078477_050 Hb_002804_020 Hb_002804_020 Hb_002541_020--Hb_002804_020 Hb_002541_020--Hb_000413_070 Hb_074449_010 Hb_074449_010 Hb_002541_020--Hb_074449_010 Hb_000120_550 Hb_000120_550 Hb_002541_020--Hb_000120_550 Hb_165279_010 Hb_165279_010 Hb_002541_020--Hb_165279_010 Hb_002818_050 Hb_002818_050 Hb_002541_020--Hb_002818_050 Hb_000152_370 Hb_000152_370 Hb_028207_060--Hb_000152_370 Hb_028207_060--Hb_003998_010 Hb_007445_010 Hb_007445_010 Hb_028207_060--Hb_007445_010 Hb_001662_050 Hb_001662_050 Hb_028207_060--Hb_001662_050 Hb_001488_220 Hb_001488_220 Hb_028207_060--Hb_001488_220 Hb_028207_060--Hb_000413_070 Hb_001205_110 Hb_001205_110 Hb_002213_040--Hb_001205_110 Hb_012239_030 Hb_012239_030 Hb_002213_040--Hb_012239_030 Hb_002192_030 Hb_002192_030 Hb_002213_040--Hb_002192_030 Hb_008749_030 Hb_008749_030 Hb_002213_040--Hb_008749_030 Hb_003082_040 Hb_003082_040 Hb_002213_040--Hb_003082_040 Hb_002662_050 Hb_002662_050 Hb_002213_040--Hb_002662_050 Hb_003640_020 Hb_003640_020 Hb_005694_010--Hb_003640_020 Hb_000331_280 Hb_000331_280 Hb_005694_010--Hb_000331_280 Hb_027760_070 Hb_027760_070 Hb_005694_010--Hb_027760_070 Hb_000418_010 Hb_000418_010 Hb_005694_010--Hb_000418_010 Hb_000245_080 Hb_000245_080 Hb_005694_010--Hb_000245_080 Hb_000457_140 Hb_000457_140 Hb_005694_010--Hb_000457_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8661 9.21932 3.61608 18.0565 2.81835 9.27527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.23131 1.69344 0.216705 7.78858 4.44519

CAGE analysis