Hb_003673_060

Information

Type -
Description -
Location Contig3673: 35824-55481
Sequence    

Annotation

kegg
ID rcu:RCOM_0591060
description catalytic, putative
nr
ID XP_012076636.1
description PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
swissprot
ID B9SQI7
description Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 OS=Ricinus communis GN=RCOM_0591060 PE=3 SV=1
trembl
ID V4TWU1
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007808mg PE=3 SV=1
Gene Ontology
ID GO:0005829
description probable bifunctional methylthioribulose-1-phosphate dehydratase enolase-phosphatase e1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37774: 35968-54803 , PASA_asmbl_37775: 52191-52419
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003673_060 0.0 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
2 Hb_006114_030 0.0770852442 transcription factor TF Family: SET hypothetical protein CISIN_1g011639mg [Citrus sinensis]
3 Hb_000046_440 0.0830683522 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
4 Hb_005839_060 0.0866759333 - - PREDICTED: uncharacterized protein At2g40430 isoform X2 [Jatropha curcas]
5 Hb_012490_030 0.0901069194 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
6 Hb_000627_030 0.0927084641 - - amine oxidase, putative [Ricinus communis]
7 Hb_011794_060 0.0954682648 - - PREDICTED: beta-amylase 2, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000889_020 0.0979361207 - - ribosome biogenesis protein brix, putative [Ricinus communis]
9 Hb_000429_120 0.0999596934 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
10 Hb_002027_070 0.0999599288 - - Auxin-binding protein T85 precursor, putative [Ricinus communis]
11 Hb_009117_030 0.1007132001 - - PREDICTED: histidine protein methyltransferase 1 homolog isoform X2 [Jatropha curcas]
12 Hb_016657_010 0.1007753145 - - PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]
13 Hb_000179_020 0.1017922829 - - amidase, putative [Ricinus communis]
14 Hb_009775_050 0.1035061773 transcription factor TF Family: Orphans hypothetical protein RCOM_0575190 [Ricinus communis]
15 Hb_003602_040 0.1039835912 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
16 Hb_000166_110 0.1061361084 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 25 [Jatropha curcas]
17 Hb_001329_230 0.1062722736 - - PREDICTED: peptide chain release factor 1-like, mitochondrial [Jatropha curcas]
18 Hb_004970_110 0.1070538646 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
19 Hb_002374_050 0.1095928635 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
20 Hb_000268_020 0.1127524304 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003673_060 Hb_003673_060 Hb_006114_030 Hb_006114_030 Hb_003673_060--Hb_006114_030 Hb_000046_440 Hb_000046_440 Hb_003673_060--Hb_000046_440 Hb_005839_060 Hb_005839_060 Hb_003673_060--Hb_005839_060 Hb_012490_030 Hb_012490_030 Hb_003673_060--Hb_012490_030 Hb_000627_030 Hb_000627_030 Hb_003673_060--Hb_000627_030 Hb_011794_060 Hb_011794_060 Hb_003673_060--Hb_011794_060 Hb_002374_050 Hb_002374_050 Hb_006114_030--Hb_002374_050 Hb_004689_050 Hb_004689_050 Hb_006114_030--Hb_004689_050 Hb_033834_060 Hb_033834_060 Hb_006114_030--Hb_033834_060 Hb_006114_030--Hb_000046_440 Hb_002784_060 Hb_002784_060 Hb_006114_030--Hb_002784_060 Hb_026099_010 Hb_026099_010 Hb_000046_440--Hb_026099_010 Hb_021409_170 Hb_021409_170 Hb_000046_440--Hb_021409_170 Hb_000789_080 Hb_000789_080 Hb_000046_440--Hb_000789_080 Hb_000429_120 Hb_000429_120 Hb_000046_440--Hb_000429_120 Hb_001221_040 Hb_001221_040 Hb_000046_440--Hb_001221_040 Hb_000567_050 Hb_000567_050 Hb_000046_440--Hb_000567_050 Hb_000703_220 Hb_000703_220 Hb_005839_060--Hb_000703_220 Hb_000166_110 Hb_000166_110 Hb_005839_060--Hb_000166_110 Hb_004204_020 Hb_004204_020 Hb_005839_060--Hb_004204_020 Hb_009133_010 Hb_009133_010 Hb_005839_060--Hb_009133_010 Hb_011689_020 Hb_011689_020 Hb_005839_060--Hb_011689_020 Hb_002272_180 Hb_002272_180 Hb_012490_030--Hb_002272_180 Hb_012490_030--Hb_000429_120 Hb_020719_030 Hb_020719_030 Hb_012490_030--Hb_020719_030 Hb_001866_110 Hb_001866_110 Hb_012490_030--Hb_001866_110 Hb_000889_020 Hb_000889_020 Hb_012490_030--Hb_000889_020 Hb_012490_030--Hb_002784_060 Hb_000627_030--Hb_000889_020 Hb_000627_030--Hb_012490_030 Hb_000486_010 Hb_000486_010 Hb_000627_030--Hb_000486_010 Hb_003058_040 Hb_003058_040 Hb_000627_030--Hb_003058_040 Hb_000627_030--Hb_009133_010 Hb_000179_020 Hb_000179_020 Hb_011794_060--Hb_000179_020 Hb_011794_060--Hb_000889_020 Hb_003602_040 Hb_003602_040 Hb_011794_060--Hb_003602_040 Hb_002174_060 Hb_002174_060 Hb_011794_060--Hb_002174_060 Hb_002079_010 Hb_002079_010 Hb_011794_060--Hb_002079_010 Hb_001017_040 Hb_001017_040 Hb_011794_060--Hb_001017_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.8392 18.4652 18.5829 20.6993 61.7673 109.419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
86.4893 31.5367 35.6394 62.0489 38.193

CAGE analysis