Hb_003677_010

Information

Type transcription factor
Description TF Family: SRS
Location Contig3677: 11032-13487
Sequence    

Annotation

kegg
ID rcu:RCOM_1596220
description transcription factor, putative
nr
ID XP_012071961.1
description PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
swissprot
ID Q9LQZ5
description Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=SRS5 PE=2 SV=1
trembl
ID E6NU70
description JHL18I08.14 protein OS=Jatropha curcas GN=JHL18I08.14 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003677_010 0.0 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
2 Hb_006711_010 0.1185787534 - - cytoplasmic dynein light chain, putative [Ricinus communis]
3 Hb_005550_070 0.1253475143 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Populus euphratica]
4 Hb_005653_020 0.1271809589 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
5 Hb_000522_040 0.1284357035 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
6 Hb_002234_150 0.1324030409 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
7 Hb_001952_110 0.1350323159 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
8 Hb_005993_070 0.1382206213 - - lipid binding protein, putative [Ricinus communis]
9 Hb_011819_030 0.1391146728 - - cytochrome P450, putative [Ricinus communis]
10 Hb_002917_020 0.1400690173 - - predicted protein [Arabidopsis lyrata subsp. lyrata]
11 Hb_000556_200 0.1416511917 - - PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
12 Hb_004109_300 0.1435539619 - - hypothetical protein POPTR_0003s21800g [Populus trichocarpa]
13 Hb_006446_060 0.1435960203 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
14 Hb_005731_080 0.1449937822 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
15 Hb_002007_230 0.1497278519 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
16 Hb_001269_020 0.1497720529 - - PREDICTED: beta-Amyrin Synthase 2-like [Vitis vinifera]
17 Hb_000597_110 0.1505211004 - - PREDICTED: VQ motif-containing protein 22-like [Jatropha curcas]
18 Hb_005257_020 0.1518672269 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
19 Hb_000101_050 0.1520455272 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
20 Hb_011628_030 0.1520887348 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003677_010 Hb_003677_010 Hb_006711_010 Hb_006711_010 Hb_003677_010--Hb_006711_010 Hb_005550_070 Hb_005550_070 Hb_003677_010--Hb_005550_070 Hb_005653_020 Hb_005653_020 Hb_003677_010--Hb_005653_020 Hb_000522_040 Hb_000522_040 Hb_003677_010--Hb_000522_040 Hb_002234_150 Hb_002234_150 Hb_003677_010--Hb_002234_150 Hb_001952_110 Hb_001952_110 Hb_003677_010--Hb_001952_110 Hb_000380_040 Hb_000380_040 Hb_006711_010--Hb_000380_040 Hb_001269_020 Hb_001269_020 Hb_006711_010--Hb_001269_020 Hb_058116_010 Hb_058116_010 Hb_006711_010--Hb_058116_010 Hb_001454_340 Hb_001454_340 Hb_006711_010--Hb_001454_340 Hb_004109_300 Hb_004109_300 Hb_006711_010--Hb_004109_300 Hb_005846_010 Hb_005846_010 Hb_005550_070--Hb_005846_010 Hb_011628_030 Hb_011628_030 Hb_005550_070--Hb_011628_030 Hb_125876_010 Hb_125876_010 Hb_005550_070--Hb_125876_010 Hb_047163_010 Hb_047163_010 Hb_005550_070--Hb_047163_010 Hb_005550_070--Hb_004109_300 Hb_156949_010 Hb_156949_010 Hb_005550_070--Hb_156949_010 Hb_001621_140 Hb_001621_140 Hb_005653_020--Hb_001621_140 Hb_161393_010 Hb_161393_010 Hb_005653_020--Hb_161393_010 Hb_006446_060 Hb_006446_060 Hb_005653_020--Hb_006446_060 Hb_002553_120 Hb_002553_120 Hb_005653_020--Hb_002553_120 Hb_002081_040 Hb_002081_040 Hb_005653_020--Hb_002081_040 Hb_041769_010 Hb_041769_010 Hb_005653_020--Hb_041769_010 Hb_000522_040--Hb_001621_140 Hb_000522_040--Hb_005653_020 Hb_000522_040--Hb_006446_060 Hb_000522_040--Hb_002234_150 Hb_000251_100 Hb_000251_100 Hb_000522_040--Hb_000251_100 Hb_009012_020 Hb_009012_020 Hb_000522_040--Hb_009012_020 Hb_001080_310 Hb_001080_310 Hb_002234_150--Hb_001080_310 Hb_002311_050 Hb_002311_050 Hb_002234_150--Hb_002311_050 Hb_002234_150--Hb_041769_010 Hb_000365_300 Hb_000365_300 Hb_002234_150--Hb_000365_300 Hb_005731_080 Hb_005731_080 Hb_002234_150--Hb_005731_080 Hb_002234_150--Hb_000251_100 Hb_001951_090 Hb_001951_090 Hb_001952_110--Hb_001951_090 Hb_012019_020 Hb_012019_020 Hb_001952_110--Hb_012019_020 Hb_001596_040 Hb_001596_040 Hb_001952_110--Hb_001596_040 Hb_000101_050 Hb_000101_050 Hb_001952_110--Hb_000101_050 Hb_008020_010 Hb_008020_010 Hb_001952_110--Hb_008020_010 Hb_001952_110--Hb_005550_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.198345 6.55541 0.202952 0.345639 0.0726503 0.10685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0252112 0.178525 0.150036 13.6743 0.208955

CAGE analysis