Hb_003678_020

Information

Type -
Description -
Location Contig3678: 90383-97280
Sequence    

Annotation

kegg
ID rcu:RCOM_1174790
description hypothetical protein
nr
ID XP_002517923.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RW04
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1174790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37786: 95274-96910
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003678_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000069_720 0.0636133673 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
3 Hb_000110_250 0.0736601175 - - PREDICTED: homologous-pairing protein 2 homolog [Jatropha curcas]
4 Hb_014720_110 0.0775127738 - - PREDICTED: GDSL esterase/lipase At5g62930 [Tarenaya hassleriana]
5 Hb_001301_110 0.0790318764 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
6 Hb_000948_160 0.0828954381 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
7 Hb_189216_020 0.0837390594 - - PREDICTED: translin [Jatropha curcas]
8 Hb_001472_100 0.0845331256 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
9 Hb_121729_010 0.0849564176 - - DNA binding protein, putative [Ricinus communis]
10 Hb_000053_020 0.0855420693 - - F-box and wd40 domain protein, putative [Ricinus communis]
11 Hb_001386_040 0.0862171254 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
12 Hb_007827_010 0.0868220128 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
13 Hb_001189_070 0.0882961497 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
14 Hb_007894_060 0.0888088531 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
15 Hb_000665_140 0.0894432744 - - PREDICTED: protein MEMO1 [Jatropha curcas]
16 Hb_111036_010 0.0905660744 - - Eukaryotic translation initiation factor 6-2 [Glycine soja]
17 Hb_000167_010 0.0920002928 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002439_010 0.0941436197 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
19 Hb_002014_030 0.094385531 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
20 Hb_007928_030 0.0947582438 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]

Gene co-expression network

sample Hb_003678_020 Hb_003678_020 Hb_000069_720 Hb_000069_720 Hb_003678_020--Hb_000069_720 Hb_000110_250 Hb_000110_250 Hb_003678_020--Hb_000110_250 Hb_014720_110 Hb_014720_110 Hb_003678_020--Hb_014720_110 Hb_001301_110 Hb_001301_110 Hb_003678_020--Hb_001301_110 Hb_000948_160 Hb_000948_160 Hb_003678_020--Hb_000948_160 Hb_189216_020 Hb_189216_020 Hb_003678_020--Hb_189216_020 Hb_000069_720--Hb_001301_110 Hb_004157_050 Hb_004157_050 Hb_000069_720--Hb_004157_050 Hb_003878_090 Hb_003878_090 Hb_000069_720--Hb_003878_090 Hb_000167_010 Hb_000167_010 Hb_000069_720--Hb_000167_010 Hb_000840_200 Hb_000840_200 Hb_000069_720--Hb_000840_200 Hb_000110_250--Hb_000069_720 Hb_000110_250--Hb_189216_020 Hb_011330_020 Hb_011330_020 Hb_000110_250--Hb_011330_020 Hb_007894_060 Hb_007894_060 Hb_000110_250--Hb_007894_060 Hb_007827_010 Hb_007827_010 Hb_000110_250--Hb_007827_010 Hb_006573_190 Hb_006573_190 Hb_014720_110--Hb_006573_190 Hb_001828_150 Hb_001828_150 Hb_014720_110--Hb_001828_150 Hb_004586_420 Hb_004586_420 Hb_014720_110--Hb_004586_420 Hb_000920_200 Hb_000920_200 Hb_014720_110--Hb_000920_200 Hb_003622_030 Hb_003622_030 Hb_014720_110--Hb_003622_030 Hb_001301_110--Hb_004157_050 Hb_005588_060 Hb_005588_060 Hb_001301_110--Hb_005588_060 Hb_000665_140 Hb_000665_140 Hb_001301_110--Hb_000665_140 Hb_001301_110--Hb_000167_010 Hb_001301_110--Hb_007894_060 Hb_000431_170 Hb_000431_170 Hb_000948_160--Hb_000431_170 Hb_001386_040 Hb_001386_040 Hb_000948_160--Hb_001386_040 Hb_000948_160--Hb_189216_020 Hb_001599_040 Hb_001599_040 Hb_000948_160--Hb_001599_040 Hb_002994_030 Hb_002994_030 Hb_000948_160--Hb_002994_030 Hb_000078_120 Hb_000078_120 Hb_000948_160--Hb_000078_120 Hb_002553_060 Hb_002553_060 Hb_189216_020--Hb_002553_060 Hb_001470_030 Hb_001470_030 Hb_189216_020--Hb_001470_030 Hb_003938_090 Hb_003938_090 Hb_189216_020--Hb_003938_090 Hb_189216_020--Hb_002994_030 Hb_001946_400 Hb_001946_400 Hb_189216_020--Hb_001946_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.59282 1.18464 2.81318 2.11775 1.31939 1.71754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.30686 3.7829 1.57319 3.07712 2.766

CAGE analysis