Hb_003680_030

Information

Type -
Description -
Location Contig3680: 35628-40561
Sequence    

Annotation

kegg
ID rcu:RCOM_1351730
description Aspartic proteinase Asp1 precursor, putative (EC:3.4.23.3)
nr
ID XP_012082517.1
description PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
swissprot
ID Q9S9K4
description Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2
trembl
ID A0A067JZE5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16606 PE=4 SV=1
Gene Ontology
ID GO:0005622
description aspartic proteinase-like protein 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37822: 35945-40414 , PASA_asmbl_37823: 35732-38721 , PASA_asmbl_37824: 38739-40567
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003680_030 0.0 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
2 Hb_012762_060 0.0770278671 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
3 Hb_002217_320 0.1026400497 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
4 Hb_012807_150 0.102774228 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
5 Hb_006829_070 0.1032835699 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
6 Hb_002488_010 0.1035009819 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
7 Hb_000959_300 0.1196196703 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
8 Hb_000271_220 0.1206309169 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
9 Hb_000152_190 0.1217507797 - - PREDICTED: K(+) efflux antiporter 5 [Jatropha curcas]
10 Hb_000638_060 0.1233007205 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
11 Hb_001847_050 0.1248551006 - - hypothetical protein CISIN_1g019843mg [Citrus sinensis]
12 Hb_006925_050 0.1278158765 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
13 Hb_001579_300 0.1299023974 - - PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]
14 Hb_002026_020 0.1302078509 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
15 Hb_001969_140 0.1311229615 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
16 Hb_004730_020 0.1324867386 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
17 Hb_000098_170 0.1325795505 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
18 Hb_000283_140 0.1326058531 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
19 Hb_005511_130 0.1335999702 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
20 Hb_002217_080 0.1348805871 - - PREDICTED: probable beta-1,3-galactosyltransferase 16 [Jatropha curcas]

Gene co-expression network

sample Hb_003680_030 Hb_003680_030 Hb_012762_060 Hb_012762_060 Hb_003680_030--Hb_012762_060 Hb_002217_320 Hb_002217_320 Hb_003680_030--Hb_002217_320 Hb_012807_150 Hb_012807_150 Hb_003680_030--Hb_012807_150 Hb_006829_070 Hb_006829_070 Hb_003680_030--Hb_006829_070 Hb_002488_010 Hb_002488_010 Hb_003680_030--Hb_002488_010 Hb_000959_300 Hb_000959_300 Hb_003680_030--Hb_000959_300 Hb_012762_060--Hb_002217_320 Hb_012762_060--Hb_006829_070 Hb_012762_060--Hb_002488_010 Hb_002026_020 Hb_002026_020 Hb_012762_060--Hb_002026_020 Hb_000134_120 Hb_000134_120 Hb_012762_060--Hb_000134_120 Hb_000638_060 Hb_000638_060 Hb_002217_320--Hb_000638_060 Hb_001847_050 Hb_001847_050 Hb_002217_320--Hb_001847_050 Hb_003964_080 Hb_003964_080 Hb_002217_320--Hb_003964_080 Hb_002217_320--Hb_006829_070 Hb_000283_140 Hb_000283_140 Hb_012807_150--Hb_000283_140 Hb_000271_220 Hb_000271_220 Hb_012807_150--Hb_000271_220 Hb_006120_060 Hb_006120_060 Hb_012807_150--Hb_006120_060 Hb_000603_020 Hb_000603_020 Hb_012807_150--Hb_000603_020 Hb_000327_360 Hb_000327_360 Hb_012807_150--Hb_000327_360 Hb_012807_150--Hb_000638_060 Hb_006829_070--Hb_002026_020 Hb_000424_030 Hb_000424_030 Hb_006829_070--Hb_000424_030 Hb_006925_050 Hb_006925_050 Hb_006829_070--Hb_006925_050 Hb_000968_060 Hb_000968_060 Hb_002488_010--Hb_000968_060 Hb_002488_010--Hb_000959_300 Hb_000866_070 Hb_000866_070 Hb_002488_010--Hb_000866_070 Hb_002900_150 Hb_002900_150 Hb_002488_010--Hb_002900_150 Hb_001411_130 Hb_001411_130 Hb_000959_300--Hb_001411_130 Hb_001969_140 Hb_001969_140 Hb_000959_300--Hb_001969_140 Hb_002942_230 Hb_002942_230 Hb_000959_300--Hb_002942_230 Hb_003847_040 Hb_003847_040 Hb_000959_300--Hb_003847_040 Hb_000167_040 Hb_000167_040 Hb_000959_300--Hb_000167_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.77453 6.01429 13.4297 25.868 4.08321 3.65716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.70245 1.30649 2.70156 2.82094 11.5197

CAGE analysis