Hb_003680_090

Information

Type -
Description -
Location Contig3680: 84771-89584
Sequence    

Annotation

kegg
ID rcu:RCOM_0839990
description threonine dehydratase/deaminase, putative (EC:4.3.1.19)
nr
ID XP_012082524.1
description PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
swissprot
ID Q9ZSS6
description Threonine dehydratase biosynthetic, chloroplastic OS=Arabidopsis thaliana GN=OMR1 PE=1 SV=1
trembl
ID A0A067K2J0
description Threonine dehydratase OS=Jatropha curcas GN=JCGZ_16612 PE=3 SV=1
Gene Ontology
ID GO:0004794
description threonine dehydratase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37834: 84865-89475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003680_090 0.0 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
2 Hb_005917_020 0.085344847 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
3 Hb_000270_280 0.0886431206 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
4 Hb_002811_310 0.0900290908 - - hypothetical protein VITISV_025505 [Vitis vinifera]
5 Hb_004162_270 0.1004013602 - - PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic isoform X1 [Jatropha curcas]
6 Hb_001863_180 0.1162025735 - - PREDICTED: serine/threonine-protein kinase SAPK2 isoform X1 [Jatropha curcas]
7 Hb_003053_070 0.1162616349 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
8 Hb_010632_020 0.116458652 - - hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
9 Hb_000307_070 0.1207145549 - - protein kinase, putative [Ricinus communis]
10 Hb_000310_060 0.12118702 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
11 Hb_000402_020 0.1212280333 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000684_200 0.1218684224 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
13 Hb_004648_030 0.1233270535 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
14 Hb_001587_040 0.1235734735 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
15 Hb_005784_030 0.1241730389 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
16 Hb_158092_100 0.126960165 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
17 Hb_004502_010 0.1274242364 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
18 Hb_000210_080 0.1276027017 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
19 Hb_000940_030 0.1280486065 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
20 Hb_001365_030 0.1283042387 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]

Gene co-expression network

sample Hb_003680_090 Hb_003680_090 Hb_005917_020 Hb_005917_020 Hb_003680_090--Hb_005917_020 Hb_000270_280 Hb_000270_280 Hb_003680_090--Hb_000270_280 Hb_002811_310 Hb_002811_310 Hb_003680_090--Hb_002811_310 Hb_004162_270 Hb_004162_270 Hb_003680_090--Hb_004162_270 Hb_001863_180 Hb_001863_180 Hb_003680_090--Hb_001863_180 Hb_003053_070 Hb_003053_070 Hb_003680_090--Hb_003053_070 Hb_004502_010 Hb_004502_010 Hb_005917_020--Hb_004502_010 Hb_011114_020 Hb_011114_020 Hb_005917_020--Hb_011114_020 Hb_000307_070 Hb_000307_070 Hb_005917_020--Hb_000307_070 Hb_001959_060 Hb_001959_060 Hb_005917_020--Hb_001959_060 Hb_005917_020--Hb_002811_310 Hb_000310_060 Hb_000310_060 Hb_000270_280--Hb_000310_060 Hb_000940_030 Hb_000940_030 Hb_000270_280--Hb_000940_030 Hb_004648_030 Hb_004648_030 Hb_000270_280--Hb_004648_030 Hb_000270_280--Hb_004162_270 Hb_005784_030 Hb_005784_030 Hb_000270_280--Hb_005784_030 Hb_027298_020 Hb_027298_020 Hb_002811_310--Hb_027298_020 Hb_000703_070 Hb_000703_070 Hb_002811_310--Hb_000703_070 Hb_005563_040 Hb_005563_040 Hb_002811_310--Hb_005563_040 Hb_010557_010 Hb_010557_010 Hb_002811_310--Hb_010557_010 Hb_002411_100 Hb_002411_100 Hb_002811_310--Hb_002411_100 Hb_000684_200 Hb_000684_200 Hb_004162_270--Hb_000684_200 Hb_004162_270--Hb_003053_070 Hb_000395_010 Hb_000395_010 Hb_004162_270--Hb_000395_010 Hb_004162_270--Hb_005784_030 Hb_001863_180--Hb_003053_070 Hb_001863_180--Hb_000310_060 Hb_001863_180--Hb_000270_280 Hb_005527_060 Hb_005527_060 Hb_001863_180--Hb_005527_060 Hb_001360_030 Hb_001360_030 Hb_001863_180--Hb_001360_030 Hb_004837_100 Hb_004837_100 Hb_003053_070--Hb_004837_100 Hb_001365_020 Hb_001365_020 Hb_003053_070--Hb_001365_020 Hb_003053_070--Hb_000684_200 Hb_000516_080 Hb_000516_080 Hb_003053_070--Hb_000516_080 Hb_001365_030 Hb_001365_030 Hb_003053_070--Hb_001365_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.76859 7.23546 52.2046 16.4029 1.7175 2.66831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.50192 6.99671 4.59018 15.9741 52.1376

CAGE analysis