Hb_003680_110

Information

Type -
Description -
Location Contig3680: 95056-95821
Sequence    

Annotation

kegg
ID rcu:RCOM_0840120
description zinc finger protein, putative
nr
ID XP_002528628.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9LZC5
description GDSL esterase/lipase At5g03820 OS=Arabidopsis thaliana GN=At5g03820 PE=3 SV=1
trembl
ID B9SRK9
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0840120 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at5g03820-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003680_110 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_007083_010 0.2290577136 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like, partial [Nelumbo nucifera]
3 Hb_007778_020 0.2333373215 - - -
4 Hb_188209_010 0.2482664618 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X2 [Jatropha curcas]
5 Hb_000988_060 0.2520217997 - - hypothetical protein JCGZ_21307 [Jatropha curcas]
6 Hb_001301_240 0.2546107521 - - -
7 Hb_002450_040 0.2556148691 - - PREDICTED: DNA-directed RNA polymerases II and V subunit 6B [Vitis vinifera]
8 Hb_001427_050 0.2563164906 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
9 Hb_000003_150 0.2567715712 - - PREDICTED: probable protein arginine N-methyltransferase 6 [Jatropha curcas]
10 Hb_005511_170 0.2568581894 - - hypothetical protein CISIN_1g030718mg [Citrus sinensis]
11 Hb_022132_010 0.2577887842 - - unknown [Medicago truncatula]
12 Hb_188996_010 0.2594124397 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000169_190 0.2595649236 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
14 Hb_063805_010 0.2598294416 - - -
15 Hb_027472_210 0.2599933532 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
16 Hb_007123_070 0.2611424901 - - -
17 Hb_036227_010 0.2615260816 - - -
18 Hb_092337_020 0.2616516705 - - hypothetical protein B456_013G264900 [Gossypium raimondii]
19 Hb_003297_010 0.2627834748 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
20 Hb_000175_090 0.2634895204 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003680_110 Hb_003680_110 Hb_007083_010 Hb_007083_010 Hb_003680_110--Hb_007083_010 Hb_007778_020 Hb_007778_020 Hb_003680_110--Hb_007778_020 Hb_188209_010 Hb_188209_010 Hb_003680_110--Hb_188209_010 Hb_000988_060 Hb_000988_060 Hb_003680_110--Hb_000988_060 Hb_001301_240 Hb_001301_240 Hb_003680_110--Hb_001301_240 Hb_002450_040 Hb_002450_040 Hb_003680_110--Hb_002450_040 Hb_014720_170 Hb_014720_170 Hb_007083_010--Hb_014720_170 Hb_027472_210 Hb_027472_210 Hb_007083_010--Hb_027472_210 Hb_000504_170 Hb_000504_170 Hb_007083_010--Hb_000504_170 Hb_002043_090 Hb_002043_090 Hb_007083_010--Hb_002043_090 Hb_002026_140 Hb_002026_140 Hb_007083_010--Hb_002026_140 Hb_001427_050 Hb_001427_050 Hb_007083_010--Hb_001427_050 Hb_000175_090 Hb_000175_090 Hb_007778_020--Hb_000175_090 Hb_007778_020--Hb_000504_170 Hb_000258_320 Hb_000258_320 Hb_007778_020--Hb_000258_320 Hb_007778_020--Hb_014720_170 Hb_007778_020--Hb_007083_010 Hb_003297_010 Hb_003297_010 Hb_007778_020--Hb_003297_010 Hb_000788_130 Hb_000788_130 Hb_188209_010--Hb_000788_130 Hb_000789_070 Hb_000789_070 Hb_188209_010--Hb_000789_070 Hb_000326_070 Hb_000326_070 Hb_188209_010--Hb_000326_070 Hb_003371_180 Hb_003371_180 Hb_188209_010--Hb_003371_180 Hb_188209_010--Hb_000175_090 Hb_013405_060 Hb_013405_060 Hb_188209_010--Hb_013405_060 Hb_012184_050 Hb_012184_050 Hb_000988_060--Hb_012184_050 Hb_121729_020 Hb_121729_020 Hb_000988_060--Hb_121729_020 Hb_005535_060 Hb_005535_060 Hb_000988_060--Hb_005535_060 Hb_000608_040 Hb_000608_040 Hb_000988_060--Hb_000608_040 Hb_005695_060 Hb_005695_060 Hb_000988_060--Hb_005695_060 Hb_063409_020 Hb_063409_020 Hb_000988_060--Hb_063409_020 Hb_000975_220 Hb_000975_220 Hb_001301_240--Hb_000975_220 Hb_000035_250 Hb_000035_250 Hb_001301_240--Hb_000035_250 Hb_000059_340 Hb_000059_340 Hb_001301_240--Hb_000059_340 Hb_006261_090 Hb_006261_090 Hb_001301_240--Hb_006261_090 Hb_158144_010 Hb_158144_010 Hb_001301_240--Hb_158144_010 Hb_001671_040 Hb_001671_040 Hb_001301_240--Hb_001671_040 Hb_001377_030 Hb_001377_030 Hb_002450_040--Hb_001377_030 Hb_000926_180 Hb_000926_180 Hb_002450_040--Hb_000926_180 Hb_007313_090 Hb_007313_090 Hb_002450_040--Hb_007313_090 Hb_001373_110 Hb_001373_110 Hb_002450_040--Hb_001373_110 Hb_000297_110 Hb_000297_110 Hb_002450_040--Hb_000297_110 Hb_000976_260 Hb_000976_260 Hb_002450_040--Hb_000976_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.869187 0.215198 1.00302 0.0498883 0.28344 0.459802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.339066 0.355246 0 0.146391 0

CAGE analysis