Hb_003680_140

Information

Type -
Description -
Location Contig3680: 128547-132174
Sequence    

Annotation

kegg
ID pop:POPTR_0006s11920g
description hypothetical protein
nr
ID XP_011018859.1
description PREDICTED: uncharacterized protein LOC105121770 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9MTM3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s11920g PE=4 SV=1
Gene Ontology
ID GO:0016021
description sulfite exporter family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37839: 128662-131455
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003680_140 0.0 - - PREDICTED: uncharacterized protein LOC105121770 [Populus euphratica]
2 Hb_002309_050 0.164823616 - - beta-carotene hydroxylase, putative [Ricinus communis]
3 Hb_001975_030 0.1679622948 - - 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase, partial [Plectranthus barbatus]
4 Hb_002603_110 0.1897792874 - - PREDICTED: uncharacterized protein LOC105646325 [Jatropha curcas]
5 Hb_006836_030 0.1960926388 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
6 Hb_004931_110 0.1971615942 - - inorganic phosphate transporter, putative [Ricinus communis]
7 Hb_000317_420 0.2071384034 - - PREDICTED: extradiol ring-cleavage dioxygenase [Jatropha curcas]
8 Hb_001817_100 0.2096029031 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
9 Hb_027654_080 0.2096083573 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1 [Jatropha curcas]
10 Hb_011618_100 0.2113981659 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
11 Hb_001329_070 0.2150041012 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
12 Hb_004787_040 0.2150925367 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002660_120 0.2189351679 - - PREDICTED: putative serine/threonine-protein kinase [Populus euphratica]
14 Hb_000771_060 0.2193290188 - - PREDICTED: spermine synthase [Jatropha curcas]
15 Hb_001098_030 0.2195299236 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Populus euphratica]
16 Hb_002217_100 0.2198420226 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
17 Hb_093458_010 0.2204967567 - - hypothetical protein CISIN_1g0277592mg [Citrus sinensis]
18 Hb_007590_090 0.2215767641 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
19 Hb_001975_040 0.2246039001 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
20 Hb_170426_010 0.2286207635 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]

Gene co-expression network

sample Hb_003680_140 Hb_003680_140 Hb_002309_050 Hb_002309_050 Hb_003680_140--Hb_002309_050 Hb_001975_030 Hb_001975_030 Hb_003680_140--Hb_001975_030 Hb_002603_110 Hb_002603_110 Hb_003680_140--Hb_002603_110 Hb_006836_030 Hb_006836_030 Hb_003680_140--Hb_006836_030 Hb_004931_110 Hb_004931_110 Hb_003680_140--Hb_004931_110 Hb_000317_420 Hb_000317_420 Hb_003680_140--Hb_000317_420 Hb_004787_040 Hb_004787_040 Hb_002309_050--Hb_004787_040 Hb_000352_200 Hb_000352_200 Hb_002309_050--Hb_000352_200 Hb_170426_010 Hb_170426_010 Hb_002309_050--Hb_170426_010 Hb_027654_080 Hb_027654_080 Hb_002309_050--Hb_027654_080 Hb_004089_020 Hb_004089_020 Hb_002309_050--Hb_004089_020 Hb_001817_100 Hb_001817_100 Hb_001975_030--Hb_001817_100 Hb_007590_090 Hb_007590_090 Hb_001975_030--Hb_007590_090 Hb_000012_110 Hb_000012_110 Hb_001975_030--Hb_000012_110 Hb_002615_030 Hb_002615_030 Hb_001975_030--Hb_002615_030 Hb_001998_200 Hb_001998_200 Hb_001975_030--Hb_001998_200 Hb_000110_060 Hb_000110_060 Hb_001975_030--Hb_000110_060 Hb_002603_110--Hb_001975_030 Hb_000483_100 Hb_000483_100 Hb_002603_110--Hb_000483_100 Hb_000008_060 Hb_000008_060 Hb_002603_110--Hb_000008_060 Hb_000086_390 Hb_000086_390 Hb_002603_110--Hb_000086_390 Hb_003226_200 Hb_003226_200 Hb_002603_110--Hb_003226_200 Hb_032568_010 Hb_032568_010 Hb_002603_110--Hb_032568_010 Hb_006836_030--Hb_000317_420 Hb_027298_030 Hb_027298_030 Hb_006836_030--Hb_027298_030 Hb_006836_030--Hb_000012_110 Hb_001975_040 Hb_001975_040 Hb_006836_030--Hb_001975_040 Hb_006836_030--Hb_001975_030 Hb_004007_110 Hb_004007_110 Hb_006836_030--Hb_004007_110 Hb_093458_010 Hb_093458_010 Hb_004931_110--Hb_093458_010 Hb_000300_700 Hb_000300_700 Hb_004931_110--Hb_000300_700 Hb_000008_400 Hb_000008_400 Hb_004931_110--Hb_000008_400 Hb_002217_100 Hb_002217_100 Hb_004931_110--Hb_002217_100 Hb_002671_090 Hb_002671_090 Hb_004931_110--Hb_002671_090 Hb_001221_330 Hb_001221_330 Hb_004931_110--Hb_001221_330 Hb_007441_240 Hb_007441_240 Hb_000317_420--Hb_007441_240 Hb_000317_420--Hb_004007_110 Hb_000723_170 Hb_000723_170 Hb_000317_420--Hb_000723_170 Hb_000317_420--Hb_001975_040 Hb_158104_020 Hb_158104_020 Hb_000317_420--Hb_158104_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0114007 2.71893 4.94864 7.67646 0 0.0334166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.648359 7.85588 4.00965 4.0967 4.08052

CAGE analysis