Hb_003680_150

Information

Type -
Description -
Location Contig3680: 144438-150738
Sequence    

Annotation

kegg
ID rcu:RCOM_0840470
description srpk, putative (EC:2.7.12.1)
nr
ID XP_002528633.1
description srpk, putative [Ricinus communis]
swissprot
ID P36616
description Protein kinase dsk1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dsk1 PE=3 SV=2
trembl
ID B9SRL4
description Srpk, putative OS=Ricinus communis GN=RCOM_0840470 PE=3 SV=1
Gene Ontology
ID GO:0004674
description protein kinase dsk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37842: 149950-150711
cDNA
(Sanger)
(ID:Location)		 007_A20.ab1: 150224-150707 , 032_L22.ab1: 150249-150711

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003680_150 0.0 - - srpk, putative [Ricinus communis]
2 Hb_002823_030 0.034194185 - - -
3 Hb_007576_110 0.060054167 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
4 Hb_014361_070 0.0614298268 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
5 Hb_000853_230 0.0619038985 - - syntaxin, putative [Ricinus communis]
6 Hb_023480_010 0.0621866421 - - cellular nucleic acid binding protein, putative [Ricinus communis]
7 Hb_000484_030 0.0628390021 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
8 Hb_002835_230 0.0628517958 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
9 Hb_000190_120 0.0638469222 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
10 Hb_005993_050 0.0653258809 - - Protein AFR, putative [Ricinus communis]
11 Hb_001454_280 0.0656105549 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
12 Hb_004935_030 0.065715005 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
13 Hb_003371_110 0.065928258 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
14 Hb_003362_070 0.0664080097 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
15 Hb_000975_040 0.0666028748 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
16 Hb_002684_040 0.0667042945 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
17 Hb_008159_020 0.0675924203 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
18 Hb_003025_110 0.0678736493 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
19 Hb_002174_020 0.0682164041 - - ring finger protein, putative [Ricinus communis]
20 Hb_183612_040 0.068492241 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]

Gene co-expression network

sample Hb_003680_150 Hb_003680_150 Hb_002823_030 Hb_002823_030 Hb_003680_150--Hb_002823_030 Hb_007576_110 Hb_007576_110 Hb_003680_150--Hb_007576_110 Hb_014361_070 Hb_014361_070 Hb_003680_150--Hb_014361_070 Hb_000853_230 Hb_000853_230 Hb_003680_150--Hb_000853_230 Hb_023480_010 Hb_023480_010 Hb_003680_150--Hb_023480_010 Hb_000484_030 Hb_000484_030 Hb_003680_150--Hb_000484_030 Hb_000190_120 Hb_000190_120 Hb_002823_030--Hb_000190_120 Hb_003371_110 Hb_003371_110 Hb_002823_030--Hb_003371_110 Hb_002835_230 Hb_002835_230 Hb_002823_030--Hb_002835_230 Hb_002823_030--Hb_014361_070 Hb_003018_130 Hb_003018_130 Hb_002823_030--Hb_003018_130 Hb_000789_310 Hb_000789_310 Hb_007576_110--Hb_000789_310 Hb_000366_120 Hb_000366_120 Hb_007576_110--Hb_000366_120 Hb_007576_110--Hb_014361_070 Hb_007576_110--Hb_000190_120 Hb_001409_020 Hb_001409_020 Hb_007576_110--Hb_001409_020 Hb_002375_010 Hb_002375_010 Hb_007576_110--Hb_002375_010 Hb_000975_040 Hb_000975_040 Hb_014361_070--Hb_000975_040 Hb_014361_070--Hb_003371_110 Hb_000289_040 Hb_000289_040 Hb_014361_070--Hb_000289_040 Hb_001195_320 Hb_001195_320 Hb_014361_070--Hb_001195_320 Hb_006620_020 Hb_006620_020 Hb_000853_230--Hb_006620_020 Hb_004055_150 Hb_004055_150 Hb_000853_230--Hb_004055_150 Hb_000879_200 Hb_000879_200 Hb_000853_230--Hb_000879_200 Hb_000390_180 Hb_000390_180 Hb_000853_230--Hb_000390_180 Hb_033720_010 Hb_033720_010 Hb_000853_230--Hb_033720_010 Hb_001926_030 Hb_001926_030 Hb_000853_230--Hb_001926_030 Hb_000983_150 Hb_000983_150 Hb_023480_010--Hb_000983_150 Hb_000544_090 Hb_000544_090 Hb_023480_010--Hb_000544_090 Hb_002684_040 Hb_002684_040 Hb_023480_010--Hb_002684_040 Hb_003025_110 Hb_003025_110 Hb_023480_010--Hb_003025_110 Hb_023480_010--Hb_000853_230 Hb_008453_140 Hb_008453_140 Hb_000484_030--Hb_008453_140 Hb_000484_030--Hb_001409_020 Hb_001408_040 Hb_001408_040 Hb_000484_030--Hb_001408_040 Hb_007416_340 Hb_007416_340 Hb_000484_030--Hb_007416_340 Hb_003125_120 Hb_003125_120 Hb_000484_030--Hb_003125_120 Hb_000696_230 Hb_000696_230 Hb_000484_030--Hb_000696_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0929 8.87576 6.03949 7.33347 10.7628 12.0542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.45616 6.91055 6.17674 8.09133 6.71451

CAGE analysis