Hb_003680_240

Information

Type -
Description -
Location Contig3680: 248788-251054
Sequence    

Annotation

kegg
ID rcu:RCOM_0840960
description Protein kinase APK1A, chloroplast precursor, putative (EC:2.7.11.30)
nr
ID XP_012082544.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
swissprot
ID Q9SJQ1
description Leucine-rich repeat receptor-like protein kinase PXC1 OS=Arabidopsis thaliana GN=PXC1 PE=2 SV=1
trembl
ID A0A067JZ71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16630 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable leucine-rich repeat receptor-like protein kinase at1g68400

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37855: 248691-251105
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003680_240 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
2 Hb_002686_220 0.0831797171 - - PREDICTED: expansin-A15-like [Jatropha curcas]
3 Hb_003598_050 0.084030073 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
4 Hb_006153_140 0.0870220518 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
5 Hb_000331_630 0.0872770589 - - hypothetical protein B456_008G203900 [Gossypium raimondii]
6 Hb_140627_040 0.0877815733 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
7 Hb_017061_010 0.0883546109 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
8 Hb_001818_010 0.0911315548 - - Disease resistance response protein, putative [Ricinus communis]
9 Hb_015978_020 0.0938686654 - - Multidrug resistance protein ABC transporter family protein, putative [Theobroma cacao]
10 Hb_000408_060 0.0955522405 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
11 Hb_090210_010 0.0965041969 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
12 Hb_001496_150 0.096806118 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
13 Hb_051212_020 0.0981834955 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
14 Hb_000227_290 0.0997710611 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
15 Hb_000207_060 0.0999701864 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
16 Hb_112950_010 0.1003012229 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
17 Hb_001006_300 0.100431318 - - lipid binding protein, putative [Ricinus communis]
18 Hb_135757_030 0.1012138522 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
19 Hb_000731_180 0.1019142717 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
20 Hb_000614_300 0.1026018492 - - PREDICTED: BAHD acyltransferase At5g47980-like [Jatropha curcas]

Gene co-expression network

sample Hb_003680_240 Hb_003680_240 Hb_002686_220 Hb_002686_220 Hb_003680_240--Hb_002686_220 Hb_003598_050 Hb_003598_050 Hb_003680_240--Hb_003598_050 Hb_006153_140 Hb_006153_140 Hb_003680_240--Hb_006153_140 Hb_000331_630 Hb_000331_630 Hb_003680_240--Hb_000331_630 Hb_140627_040 Hb_140627_040 Hb_003680_240--Hb_140627_040 Hb_017061_010 Hb_017061_010 Hb_003680_240--Hb_017061_010 Hb_112950_010 Hb_112950_010 Hb_002686_220--Hb_112950_010 Hb_002686_220--Hb_006153_140 Hb_002686_220--Hb_003598_050 Hb_009079_020 Hb_009079_020 Hb_002686_220--Hb_009079_020 Hb_006573_120 Hb_006573_120 Hb_002686_220--Hb_006573_120 Hb_015175_070 Hb_015175_070 Hb_002686_220--Hb_015175_070 Hb_003598_050--Hb_112950_010 Hb_001500_020 Hb_001500_020 Hb_003598_050--Hb_001500_020 Hb_006351_050 Hb_006351_050 Hb_003598_050--Hb_006351_050 Hb_000497_080 Hb_000497_080 Hb_003598_050--Hb_000497_080 Hb_180088_010 Hb_180088_010 Hb_003598_050--Hb_180088_010 Hb_006153_140--Hb_009079_020 Hb_001818_010 Hb_001818_010 Hb_006153_140--Hb_001818_010 Hb_006153_140--Hb_112950_010 Hb_000866_130 Hb_000866_130 Hb_006153_140--Hb_000866_130 Hb_006153_140--Hb_015175_070 Hb_000614_300 Hb_000614_300 Hb_000331_630--Hb_000614_300 Hb_002263_050 Hb_002263_050 Hb_000331_630--Hb_002263_050 Hb_000789_160 Hb_000789_160 Hb_000331_630--Hb_000789_160 Hb_001357_110 Hb_001357_110 Hb_000331_630--Hb_001357_110 Hb_000207_060 Hb_000207_060 Hb_000331_630--Hb_000207_060 Hb_034713_010 Hb_034713_010 Hb_140627_040--Hb_034713_010 Hb_009367_070 Hb_009367_070 Hb_140627_040--Hb_009367_070 Hb_051212_020 Hb_051212_020 Hb_140627_040--Hb_051212_020 Hb_140627_040--Hb_000207_060 Hb_009062_020 Hb_009062_020 Hb_140627_040--Hb_009062_020 Hb_001006_300 Hb_001006_300 Hb_017061_010--Hb_001006_300 Hb_003858_070 Hb_003858_070 Hb_017061_010--Hb_003858_070 Hb_001898_030 Hb_001898_030 Hb_017061_010--Hb_001898_030 Hb_000964_120 Hb_000964_120 Hb_017061_010--Hb_000964_120 Hb_005144_150 Hb_005144_150 Hb_017061_010--Hb_005144_150 Hb_017061_010--Hb_000497_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0946644 1.22592 9.78716 57.7357 0.105601 0.0918562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.11042 8.10654

CAGE analysis