Hb_003682_050

Information

Type transcription factor
Description TF Family: NAC
Location Contig3682: 68286-70899
Sequence    

Annotation

kegg
ID rcu:RCOM_1064740
description hypothetical protein
nr
ID XP_012072809.1
description PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
swissprot
ID Q6NQK2
description NAC domain-containing protein 8 OS=Arabidopsis thaliana GN=NAC008 PE=2 SV=1
trembl
ID R4NG13
description NAC transcription factor 093 OS=Jatropha curcas GN=JCGZ_10243 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003682_050 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
2 Hb_027380_160 0.1160961748 - - -
3 Hb_001926_040 0.1374052466 - - PREDICTED: uncharacterized protein LOC105649618 [Jatropha curcas]
4 Hb_000521_140 0.1388482774 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
5 Hb_000085_240 0.1458900908 - - fimbrin, putative [Ricinus communis]
6 Hb_000001_110 0.1532011025 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002687_140 0.1546551886 - - hypothetical protein JCGZ_24463 [Jatropha curcas]
8 Hb_019962_030 0.1588283706 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
9 Hb_000666_110 0.1590723887 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
10 Hb_063100_010 0.1618497159 - - TATA box-binding protein-associated factor [Populus trichocarpa]
11 Hb_007164_020 0.1620273129 - - hypothetical protein glysoja_025872 [Glycine soja]
12 Hb_001504_150 0.162624239 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
13 Hb_004722_060 0.1637060188 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
14 Hb_001776_090 0.166516073 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
15 Hb_001828_200 0.1668034684 - - ribosomal protein L13 [Populus trichocarpa]
16 Hb_003751_060 0.1676584849 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
17 Hb_143766_090 0.168019724 - - 60S ribosomal protein L31B [Hevea brasiliensis]
18 Hb_001005_060 0.169100097 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase MAK3 [Jatropha curcas]
19 Hb_000359_330 0.1711457476 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005535_050 0.1720659283 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_003682_050 Hb_003682_050 Hb_027380_160 Hb_027380_160 Hb_003682_050--Hb_027380_160 Hb_001926_040 Hb_001926_040 Hb_003682_050--Hb_001926_040 Hb_000521_140 Hb_000521_140 Hb_003682_050--Hb_000521_140 Hb_000085_240 Hb_000085_240 Hb_003682_050--Hb_000085_240 Hb_000001_110 Hb_000001_110 Hb_003682_050--Hb_000001_110 Hb_002687_140 Hb_002687_140 Hb_003682_050--Hb_002687_140 Hb_063100_010 Hb_063100_010 Hb_027380_160--Hb_063100_010 Hb_027380_160--Hb_001926_040 Hb_024399_010 Hb_024399_010 Hb_027380_160--Hb_024399_010 Hb_011716_040 Hb_011716_040 Hb_027380_160--Hb_011716_040 Hb_000340_010 Hb_000340_010 Hb_027380_160--Hb_000340_010 Hb_005843_110 Hb_005843_110 Hb_001926_040--Hb_005843_110 Hb_003025_090 Hb_003025_090 Hb_001926_040--Hb_003025_090 Hb_004206_010 Hb_004206_010 Hb_001926_040--Hb_004206_010 Hb_000046_300 Hb_000046_300 Hb_001926_040--Hb_000046_300 Hb_000666_110 Hb_000666_110 Hb_001926_040--Hb_000666_110 Hb_000417_180 Hb_000417_180 Hb_001926_040--Hb_000417_180 Hb_002026_140 Hb_002026_140 Hb_000521_140--Hb_002026_140 Hb_001195_040 Hb_001195_040 Hb_000521_140--Hb_001195_040 Hb_002681_060 Hb_002681_060 Hb_000521_140--Hb_002681_060 Hb_000836_430 Hb_000836_430 Hb_000521_140--Hb_000836_430 Hb_002947_040 Hb_002947_040 Hb_000521_140--Hb_002947_040 Hb_000085_240--Hb_000666_110 Hb_007164_020 Hb_007164_020 Hb_000085_240--Hb_007164_020 Hb_001504_150 Hb_001504_150 Hb_000085_240--Hb_001504_150 Hb_000621_080 Hb_000621_080 Hb_000085_240--Hb_000621_080 Hb_019962_030 Hb_019962_030 Hb_000085_240--Hb_019962_030 Hb_001439_150 Hb_001439_150 Hb_000085_240--Hb_001439_150 Hb_000270_840 Hb_000270_840 Hb_000001_110--Hb_000270_840 Hb_000933_050 Hb_000933_050 Hb_000001_110--Hb_000933_050 Hb_000538_020 Hb_000538_020 Hb_000001_110--Hb_000538_020 Hb_001405_050 Hb_001405_050 Hb_000001_110--Hb_001405_050 Hb_005529_010 Hb_005529_010 Hb_000001_110--Hb_005529_010 Hb_000001_110--Hb_000666_110 Hb_001348_070 Hb_001348_070 Hb_002687_140--Hb_001348_070 Hb_003752_080 Hb_003752_080 Hb_002687_140--Hb_003752_080 Hb_000808_250 Hb_000808_250 Hb_002687_140--Hb_000808_250 Hb_003849_060 Hb_003849_060 Hb_002687_140--Hb_003849_060 Hb_007007_050 Hb_007007_050 Hb_002687_140--Hb_007007_050 Hb_001352_090 Hb_001352_090 Hb_002687_140--Hb_001352_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.0118 4.92782 5.0001 0.371491 10.8654 4.25964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.7461 6.91608 4.33417 1.34761 0.126909

CAGE analysis