Hb_003682_060

Information

Type -
Description -
Location Contig3682: 72230-75369
Sequence    

Annotation

kegg
ID tcc:TCM_016985
description RNA-binding CRS1 / YhbY domain protein
nr
ID XP_012071912.1
description PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
swissprot
ID Q67XL4
description Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1
trembl
ID A0A061EDN8
description RNA-binding CRS1 / YhbY domain protein OS=Theobroma cacao GN=TCM_016985 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37860: 72215-74529
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003682_060 0.0 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
2 Hb_000160_170 0.103914918 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
3 Hb_001545_140 0.1108431686 transcription factor TF Family: NAC -
4 Hb_000599_110 0.1134238497 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000107_620 0.122478484 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
6 Hb_001703_030 0.1225802019 transcription factor TF Family: SET Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis]
7 Hb_002928_130 0.1253706527 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
8 Hb_002872_020 0.1274894236 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_001629_110 0.1276907497 - - PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]
10 Hb_000789_090 0.131453263 - - hypothetical protein 17 [Hevea brasiliensis]
11 Hb_003976_010 0.1323677824 - - methionine aminopeptidase, putative [Ricinus communis]
12 Hb_000015_080 0.1326998493 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
13 Hb_002963_020 0.1342925294 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001019_040 0.1350215213 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
15 Hb_000123_260 0.1353321292 - - PREDICTED: protein gar2 [Jatropha curcas]
16 Hb_004324_250 0.1353562687 - - PREDICTED: protein IWS1 homolog A isoform X1 [Jatropha curcas]
17 Hb_001292_020 0.1360263022 - - PREDICTED: keratin, type II cytoskeletal 5 isoform X1 [Sesamum indicum]
18 Hb_008648_010 0.1382037972 - - PREDICTED: pre-rRNA-processing protein ESF2 [Jatropha curcas]
19 Hb_063090_010 0.1386520608 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
20 Hb_006400_030 0.1393054524 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]

Gene co-expression network

sample Hb_003682_060 Hb_003682_060 Hb_000160_170 Hb_000160_170 Hb_003682_060--Hb_000160_170 Hb_001545_140 Hb_001545_140 Hb_003682_060--Hb_001545_140 Hb_000599_110 Hb_000599_110 Hb_003682_060--Hb_000599_110 Hb_000107_620 Hb_000107_620 Hb_003682_060--Hb_000107_620 Hb_001703_030 Hb_001703_030 Hb_003682_060--Hb_001703_030 Hb_002928_130 Hb_002928_130 Hb_003682_060--Hb_002928_130 Hb_000189_620 Hb_000189_620 Hb_000160_170--Hb_000189_620 Hb_021443_070 Hb_021443_070 Hb_000160_170--Hb_021443_070 Hb_007426_230 Hb_007426_230 Hb_000160_170--Hb_007426_230 Hb_003878_190 Hb_003878_190 Hb_000160_170--Hb_003878_190 Hb_002097_110 Hb_002097_110 Hb_000160_170--Hb_002097_110 Hb_000015_080 Hb_000015_080 Hb_000160_170--Hb_000015_080 Hb_008878_030 Hb_008878_030 Hb_001545_140--Hb_008878_030 Hb_004048_110 Hb_004048_110 Hb_001545_140--Hb_004048_110 Hb_004837_140 Hb_004837_140 Hb_001545_140--Hb_004837_140 Hb_001545_140--Hb_002097_110 Hb_001545_140--Hb_000189_620 Hb_027472_180 Hb_027472_180 Hb_001545_140--Hb_027472_180 Hb_000085_060 Hb_000085_060 Hb_000599_110--Hb_000085_060 Hb_000599_110--Hb_000107_620 Hb_063090_010 Hb_063090_010 Hb_000599_110--Hb_063090_010 Hb_002963_020 Hb_002963_020 Hb_000599_110--Hb_002963_020 Hb_006692_030 Hb_006692_030 Hb_000599_110--Hb_006692_030 Hb_000486_010 Hb_000486_010 Hb_000599_110--Hb_000486_010 Hb_009838_080 Hb_009838_080 Hb_000107_620--Hb_009838_080 Hb_002205_070 Hb_002205_070 Hb_000107_620--Hb_002205_070 Hb_118707_030 Hb_118707_030 Hb_000107_620--Hb_118707_030 Hb_006400_030 Hb_006400_030 Hb_000107_620--Hb_006400_030 Hb_011571_010 Hb_011571_010 Hb_000107_620--Hb_011571_010 Hb_002942_190 Hb_002942_190 Hb_000107_620--Hb_002942_190 Hb_000046_280 Hb_000046_280 Hb_001703_030--Hb_000046_280 Hb_012799_180 Hb_012799_180 Hb_001703_030--Hb_012799_180 Hb_001703_030--Hb_009838_080 Hb_132835_010 Hb_132835_010 Hb_001703_030--Hb_132835_010 Hb_011867_010 Hb_011867_010 Hb_001703_030--Hb_011867_010 Hb_017904_010 Hb_017904_010 Hb_001703_030--Hb_017904_010 Hb_005993_040 Hb_005993_040 Hb_002928_130--Hb_005993_040 Hb_002928_130--Hb_000015_080 Hb_002232_440 Hb_002232_440 Hb_002928_130--Hb_002232_440 Hb_000392_440 Hb_000392_440 Hb_002928_130--Hb_000392_440 Hb_002346_020 Hb_002346_020 Hb_002928_130--Hb_002346_020 Hb_000331_080 Hb_000331_080 Hb_002928_130--Hb_000331_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.397104 0.105915 0.125934 0.0216205 0.577515 0.359443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.464867 0.560778 0.366559 0.282208 0.255109

CAGE analysis