Hb_003683_040

Information

Type -
Description -
Location Contig3683: 62198-64533
Sequence    

Annotation

kegg
ID gmx:100305515
description uncharacterized LOC100305515
nr
ID CDO98510.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q9LEY9
description H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana GN=At5g08180 PE=1 SV=1
trembl
ID A0A068TQA5
description Coffea canephora DH200=94 genomic scaffold, scaffold_2 OS=Coffea canephora GN=GSCOC_T00022630001 PE=4 SV=1
Gene Ontology
ID GO:0005730
description h aca ribonucleoprotein complex subunit 2-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37871: 62168-64428
cDNA
(Sanger)
(ID:Location)		 023_F15.ab1: 62313-64428 , 038_O02.ab1: 62210-64428 , 044_E17.ab1: 62210-64428

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003683_040 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_000196_050 0.0689709822 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
3 Hb_000184_050 0.077309139 - - NOI, putative [Ricinus communis]
4 Hb_154826_010 0.093626428 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_000815_260 0.0972840523 - - 50S ribosomal protein L32pA [Hevea brasiliensis]
6 Hb_009554_010 0.1015973867 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
7 Hb_130291_010 0.1094015598 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
8 Hb_000009_460 0.1101691769 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000227_230 0.1110053041 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
10 Hb_005736_060 0.1121005415 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
11 Hb_011828_020 0.1121502767 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]
12 Hb_000264_090 0.1132139427 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
13 Hb_000307_090 0.113889297 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
14 Hb_006816_530 0.1140562049 - - 60S ribosomal protein L18, putative [Ricinus communis]
15 Hb_003398_120 0.1170034848 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
16 Hb_010883_150 0.1174147832 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
17 Hb_004005_010 0.1174897152 - - PREDICTED: uncharacterized protein LOC102623333 isoform X2 [Citrus sinensis]
18 Hb_002713_070 0.1181782408 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
19 Hb_009793_010 0.1196310323 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
20 Hb_004109_020 0.1209655076 - - 60S ribosomal protein L18aA [Hevea brasiliensis]

Gene co-expression network

sample Hb_003683_040 Hb_003683_040 Hb_000196_050 Hb_000196_050 Hb_003683_040--Hb_000196_050 Hb_000184_050 Hb_000184_050 Hb_003683_040--Hb_000184_050 Hb_154826_010 Hb_154826_010 Hb_003683_040--Hb_154826_010 Hb_000815_260 Hb_000815_260 Hb_003683_040--Hb_000815_260 Hb_009554_010 Hb_009554_010 Hb_003683_040--Hb_009554_010 Hb_130291_010 Hb_130291_010 Hb_003683_040--Hb_130291_010 Hb_002316_060 Hb_002316_060 Hb_000196_050--Hb_002316_060 Hb_000196_050--Hb_000184_050 Hb_000196_050--Hb_009554_010 Hb_000196_050--Hb_000815_260 Hb_031042_010 Hb_031042_010 Hb_000196_050--Hb_031042_010 Hb_000184_050--Hb_130291_010 Hb_000184_050--Hb_000815_260 Hb_008847_020 Hb_008847_020 Hb_000184_050--Hb_008847_020 Hb_010883_150 Hb_010883_150 Hb_000184_050--Hb_010883_150 Hb_002471_150 Hb_002471_150 Hb_154826_010--Hb_002471_150 Hb_000227_230 Hb_000227_230 Hb_154826_010--Hb_000227_230 Hb_004800_070 Hb_004800_070 Hb_154826_010--Hb_004800_070 Hb_000009_460 Hb_000009_460 Hb_154826_010--Hb_000009_460 Hb_009793_010 Hb_009793_010 Hb_154826_010--Hb_009793_010 Hb_000815_260--Hb_130291_010 Hb_004724_160 Hb_004724_160 Hb_000815_260--Hb_004724_160 Hb_002701_050 Hb_002701_050 Hb_000815_260--Hb_002701_050 Hb_000975_110 Hb_000975_110 Hb_000815_260--Hb_000975_110 Hb_001433_050 Hb_001433_050 Hb_000815_260--Hb_001433_050 Hb_001638_260 Hb_001638_260 Hb_009554_010--Hb_001638_260 Hb_009554_010--Hb_009793_010 Hb_003226_210 Hb_003226_210 Hb_009554_010--Hb_003226_210 Hb_002713_070 Hb_002713_070 Hb_009554_010--Hb_002713_070 Hb_006816_530 Hb_006816_530 Hb_009554_010--Hb_006816_530 Hb_000086_550 Hb_000086_550 Hb_009554_010--Hb_000086_550 Hb_012265_010 Hb_012265_010 Hb_130291_010--Hb_012265_010 Hb_130291_010--Hb_001433_050 Hb_000024_030 Hb_000024_030 Hb_130291_010--Hb_000024_030 Hb_000199_070 Hb_000199_070 Hb_130291_010--Hb_000199_070 Hb_130291_010--Hb_000975_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.3605 66.1817 13.2126 55.1193 63.8057 112.886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
159.152 235.06 80.7622 87.5774 14.2351

CAGE analysis