Hb_003683_050

Information

Type -
Description -
Location Contig3683: 67172-71077
Sequence    

Annotation

kegg
ID rcu:RCOM_1619040
description hypothetical protein
nr
ID XP_012092919.1
description PREDICTED: uncharacterized protein LOC105650619 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E6NU48
description JHL10I11.4 protein OS=Jatropha curcas GN=JHL10I11.4 PE=4 SV=1
Gene Ontology
ID GO:0000775
description minichromosome instability 12-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37873: 67250-71062 , PASA_asmbl_37874: 69146-69583
cDNA
(Sanger)
(ID:Location)		 018_N02.ab1: 67740-71006 , 024_N01.ab1: 67718-71062 , 033_L01.ab1: 67434-71006

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003683_050 0.0 - - PREDICTED: uncharacterized protein LOC105650619 [Jatropha curcas]
2 Hb_001481_170 0.0613727877 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001195_760 0.0643724811 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
4 Hb_001936_080 0.0738308005 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
5 Hb_011970_030 0.0760925745 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
6 Hb_000670_020 0.077745808 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]
7 Hb_000085_180 0.0802529985 - - PREDICTED: syntaxin-52-like isoform X1 [Jatropha curcas]
8 Hb_000645_050 0.0807621469 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
9 Hb_003030_070 0.0821876265 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
10 Hb_003687_230 0.0822294297 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
11 Hb_003292_040 0.0823888159 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
12 Hb_005618_160 0.0829327599 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
13 Hb_000661_250 0.0838392128 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
14 Hb_027043_020 0.084345934 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002495_040 0.0857910491 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
16 Hb_007576_040 0.0862401633 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
17 Hb_000457_110 0.0871246615 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
18 Hb_001564_130 0.0881767403 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_001817_090 0.0883333147 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
20 Hb_010368_020 0.0885774608 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]

Gene co-expression network

sample Hb_003683_050 Hb_003683_050 Hb_001481_170 Hb_001481_170 Hb_003683_050--Hb_001481_170 Hb_001195_760 Hb_001195_760 Hb_003683_050--Hb_001195_760 Hb_001936_080 Hb_001936_080 Hb_003683_050--Hb_001936_080 Hb_011970_030 Hb_011970_030 Hb_003683_050--Hb_011970_030 Hb_000670_020 Hb_000670_020 Hb_003683_050--Hb_000670_020 Hb_000085_180 Hb_000085_180 Hb_003683_050--Hb_000085_180 Hb_001481_170--Hb_001195_760 Hb_001305_010 Hb_001305_010 Hb_001481_170--Hb_001305_010 Hb_000451_010 Hb_000451_010 Hb_001481_170--Hb_000451_010 Hb_012022_160 Hb_012022_160 Hb_001481_170--Hb_012022_160 Hb_000302_010 Hb_000302_010 Hb_001481_170--Hb_000302_010 Hb_000340_300 Hb_000340_300 Hb_001195_760--Hb_000340_300 Hb_000661_250 Hb_000661_250 Hb_001195_760--Hb_000661_250 Hb_000089_220 Hb_000089_220 Hb_001195_760--Hb_000089_220 Hb_003406_010 Hb_003406_010 Hb_001195_760--Hb_003406_010 Hb_148912_010 Hb_148912_010 Hb_001195_760--Hb_148912_010 Hb_003001_120 Hb_003001_120 Hb_001936_080--Hb_003001_120 Hb_028227_020 Hb_028227_020 Hb_001936_080--Hb_028227_020 Hb_002495_040 Hb_002495_040 Hb_001936_080--Hb_002495_040 Hb_009557_070 Hb_009557_070 Hb_001936_080--Hb_009557_070 Hb_000465_430 Hb_000465_430 Hb_001936_080--Hb_000465_430 Hb_012092_010 Hb_012092_010 Hb_001936_080--Hb_012092_010 Hb_003292_040 Hb_003292_040 Hb_011970_030--Hb_003292_040 Hb_002233_150 Hb_002233_150 Hb_011970_030--Hb_002233_150 Hb_005618_160 Hb_005618_160 Hb_011970_030--Hb_005618_160 Hb_000640_240 Hb_000640_240 Hb_011970_030--Hb_000640_240 Hb_001454_400 Hb_001454_400 Hb_011970_030--Hb_001454_400 Hb_001564_130 Hb_001564_130 Hb_011970_030--Hb_001564_130 Hb_000670_020--Hb_003292_040 Hb_000670_020--Hb_001564_130 Hb_001348_070 Hb_001348_070 Hb_000670_020--Hb_001348_070 Hb_000670_020--Hb_011970_030 Hb_010368_020 Hb_010368_020 Hb_000670_020--Hb_010368_020 Hb_000085_180--Hb_001454_400 Hb_000618_040 Hb_000618_040 Hb_000085_180--Hb_000618_040 Hb_033843_010 Hb_033843_010 Hb_000085_180--Hb_033843_010 Hb_004310_020 Hb_004310_020 Hb_000085_180--Hb_004310_020 Hb_000092_100 Hb_000092_100 Hb_000085_180--Hb_000092_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.8991 40.5995 59.0729 53.3792 94.4079 77.8234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
85.1532 92.0948 54.7946 20.8285 27.0348

CAGE analysis