Hb_003683_080

Information

Type -
Description -
Location Contig3683: 103325-110880
Sequence    

Annotation

kegg
ID rcu:RCOM_0964760
description Angio-associated migratory cell protein, putative (EC:2.7.11.7)
nr
ID XP_002517787.1
description Angio-associated migratory cell protein, putative [Ricinus communis]
swissprot
ID Q9FLX9
description Notchless protein homolog OS=Arabidopsis thaliana GN=NLE1 PE=2 SV=1
trembl
ID B9RVL8
description Angio-associated migratory cell protein, putative OS=Ricinus communis GN=RCOM_0964760 PE=4 SV=1
Gene Ontology
ID GO:0005515
description notchless protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37877: 109021-110513 , PASA_asmbl_37878: 107250-110513 , PASA_asmbl_37879: 109022-110513 , PASA_asmbl_37880: 110836-111202
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003683_080 0.0 - - Angio-associated migratory cell protein, putative [Ricinus communis]
2 Hb_000010_260 0.118336538 - - PREDICTED: uncharacterized protein LOC105640273 [Jatropha curcas]
3 Hb_008318_010 0.1282824057 - - PREDICTED: WD repeat-containing protein 82-B isoform X1 [Jatropha curcas]
4 Hb_001387_020 0.1420960797 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
5 Hb_000080_210 0.1683723053 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
6 Hb_000483_250 0.1710460355 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
7 Hb_026048_070 0.1751016698 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
8 Hb_000753_190 0.1765171065 - - PREDICTED: D-aminoacyl-tRNA deacylase [Populus euphratica]
9 Hb_001136_060 0.1808862226 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
10 Hb_000317_410 0.1835239255 - - PREDICTED: UDP-glycosyltransferase 73C5-like [Jatropha curcas]
11 Hb_002301_180 0.1843875003 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
12 Hb_005211_190 0.1855124895 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
13 Hb_000083_090 0.185680575 - - immunophilin, putative [Ricinus communis]
14 Hb_000836_140 0.1882794663 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
15 Hb_002609_210 0.1890337172 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
16 Hb_003581_100 0.189263582 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
17 Hb_001688_020 0.1910072087 - - PREDICTED: uncharacterized protein LOC103438026 [Malus domestica]
18 Hb_005656_100 0.1914814539 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000563_190 0.1927996815 - - hypothetical protein PRUPE_ppa002828mg [Prunus persica]
20 Hb_023711_010 0.1930873067 - - -

Gene co-expression network

sample Hb_003683_080 Hb_003683_080 Hb_000010_260 Hb_000010_260 Hb_003683_080--Hb_000010_260 Hb_008318_010 Hb_008318_010 Hb_003683_080--Hb_008318_010 Hb_001387_020 Hb_001387_020 Hb_003683_080--Hb_001387_020 Hb_000080_210 Hb_000080_210 Hb_003683_080--Hb_000080_210 Hb_000483_250 Hb_000483_250 Hb_003683_080--Hb_000483_250 Hb_026048_070 Hb_026048_070 Hb_003683_080--Hb_026048_070 Hb_000083_090 Hb_000083_090 Hb_000010_260--Hb_000083_090 Hb_001136_060 Hb_001136_060 Hb_000010_260--Hb_001136_060 Hb_000010_260--Hb_026048_070 Hb_000010_260--Hb_000483_250 Hb_002609_210 Hb_002609_210 Hb_000010_260--Hb_002609_210 Hb_001950_120 Hb_001950_120 Hb_008318_010--Hb_001950_120 Hb_000317_410 Hb_000317_410 Hb_008318_010--Hb_000317_410 Hb_021056_020 Hb_021056_020 Hb_008318_010--Hb_021056_020 Hb_008318_010--Hb_000010_260 Hb_008695_040 Hb_008695_040 Hb_008318_010--Hb_008695_040 Hb_001387_020--Hb_000010_260 Hb_000836_140 Hb_000836_140 Hb_001387_020--Hb_000836_140 Hb_000834_030 Hb_000834_030 Hb_001387_020--Hb_000834_030 Hb_000563_190 Hb_000563_190 Hb_001387_020--Hb_000563_190 Hb_000707_020 Hb_000707_020 Hb_001387_020--Hb_000707_020 Hb_005092_060 Hb_005092_060 Hb_000080_210--Hb_005092_060 Hb_009113_050 Hb_009113_050 Hb_000080_210--Hb_009113_050 Hb_006907_130 Hb_006907_130 Hb_000080_210--Hb_006907_130 Hb_012794_010 Hb_012794_010 Hb_000080_210--Hb_012794_010 Hb_006277_110 Hb_006277_110 Hb_000080_210--Hb_006277_110 Hb_002662_030 Hb_002662_030 Hb_000080_210--Hb_002662_030 Hb_005211_190 Hb_005211_190 Hb_000483_250--Hb_005211_190 Hb_002107_120 Hb_002107_120 Hb_000483_250--Hb_002107_120 Hb_060618_010 Hb_060618_010 Hb_000483_250--Hb_060618_010 Hb_000483_250--Hb_000836_140 Hb_001424_020 Hb_001424_020 Hb_000483_250--Hb_001424_020 Hb_000483_250--Hb_000083_090 Hb_011644_030 Hb_011644_030 Hb_026048_070--Hb_011644_030 Hb_003623_050 Hb_003623_050 Hb_026048_070--Hb_003623_050 Hb_001016_090 Hb_001016_090 Hb_026048_070--Hb_001016_090 Hb_003053_030 Hb_003053_030 Hb_026048_070--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_026048_070--Hb_148200_010 Hb_001279_360 Hb_001279_360 Hb_026048_070--Hb_001279_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.66089 0.811039 0.827071 0.655637 0.254119 2.02266
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.45596 5.31225 1.79735 3.22374 2.94786

CAGE analysis