Hb_003683_110

Information

Type -
Description -
Location Contig3683: 154572-156044
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05400g
description POPTRDRAFT_729118; hypothetical protein
nr
ID BAJ53157.1
description JHL10I11.3 [Jatropha curcas]
swissprot
ID Q1G3U6
description Plant cysteine oxidase 3 OS=Arabidopsis thaliana GN=PCO3 PE=1 SV=1
trembl
ID E6NU47
description JHL10I11.3 protein OS=Jatropha curcas GN=JHL10I11.3 PE=4 SV=1
Gene Ontology
ID GO:0016702
description 2-aminoethanethiol dioxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003683_110 0.0 - - JHL10I11.3 [Jatropha curcas]
2 Hb_002768_030 0.0557134811 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
3 Hb_001780_040 0.0643427657 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
4 Hb_012573_070 0.0680456569 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000453_090 0.0681299854 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
6 Hb_003226_100 0.0688372033 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
7 Hb_007416_030 0.071033352 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
8 Hb_000334_210 0.071079321 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
9 Hb_000510_110 0.0744785664 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
10 Hb_000996_140 0.0745626351 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
11 Hb_000029_200 0.0757499221 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
12 Hb_000127_180 0.0780866832 - - 40S ribosomal protein S18, putative [Ricinus communis]
13 Hb_003018_010 0.0793166995 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
14 Hb_002830_020 0.0794417824 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
15 Hb_010672_060 0.0802822246 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
16 Hb_000046_560 0.081327567 - - PREDICTED: uncharacterized protein LOC105118519 [Populus euphratica]
17 Hb_000920_110 0.0837291418 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
18 Hb_000025_620 0.0839594343 - - hypothetical protein POPTR_0009s05200g [Populus trichocarpa]
19 Hb_002864_050 0.0839741615 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
20 Hb_006925_040 0.0852859825 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_003683_110 Hb_003683_110 Hb_002768_030 Hb_002768_030 Hb_003683_110--Hb_002768_030 Hb_001780_040 Hb_001780_040 Hb_003683_110--Hb_001780_040 Hb_012573_070 Hb_012573_070 Hb_003683_110--Hb_012573_070 Hb_000453_090 Hb_000453_090 Hb_003683_110--Hb_000453_090 Hb_003226_100 Hb_003226_100 Hb_003683_110--Hb_003226_100 Hb_007416_030 Hb_007416_030 Hb_003683_110--Hb_007416_030 Hb_002768_030--Hb_001780_040 Hb_000127_180 Hb_000127_180 Hb_002768_030--Hb_000127_180 Hb_000996_140 Hb_000996_140 Hb_002768_030--Hb_000996_140 Hb_000035_370 Hb_000035_370 Hb_002768_030--Hb_000035_370 Hb_006831_130 Hb_006831_130 Hb_002768_030--Hb_006831_130 Hb_002235_350 Hb_002235_350 Hb_001780_040--Hb_002235_350 Hb_000025_620 Hb_000025_620 Hb_001780_040--Hb_000025_620 Hb_001780_040--Hb_000127_180 Hb_001780_040--Hb_003226_100 Hb_000545_150 Hb_000545_150 Hb_012573_070--Hb_000545_150 Hb_003528_060 Hb_003528_060 Hb_012573_070--Hb_003528_060 Hb_002518_050 Hb_002518_050 Hb_012573_070--Hb_002518_050 Hb_000926_300 Hb_000926_300 Hb_012573_070--Hb_000926_300 Hb_001314_100 Hb_001314_100 Hb_012573_070--Hb_001314_100 Hb_001300_040 Hb_001300_040 Hb_000453_090--Hb_001300_040 Hb_004846_090 Hb_004846_090 Hb_000453_090--Hb_004846_090 Hb_006925_040 Hb_006925_040 Hb_000453_090--Hb_006925_040 Hb_010672_060 Hb_010672_060 Hb_000453_090--Hb_010672_060 Hb_000453_090--Hb_001780_040 Hb_000920_110 Hb_000920_110 Hb_003226_100--Hb_000920_110 Hb_004157_030 Hb_004157_030 Hb_003226_100--Hb_004157_030 Hb_003018_020 Hb_003018_020 Hb_003226_100--Hb_003018_020 Hb_002056_050 Hb_002056_050 Hb_003226_100--Hb_002056_050 Hb_001616_040 Hb_001616_040 Hb_003226_100--Hb_001616_040 Hb_143496_010 Hb_143496_010 Hb_003226_100--Hb_143496_010 Hb_000608_370 Hb_000608_370 Hb_007416_030--Hb_000608_370 Hb_002686_020 Hb_002686_020 Hb_007416_030--Hb_002686_020 Hb_000788_090 Hb_000788_090 Hb_007416_030--Hb_000788_090 Hb_002864_050 Hb_002864_050 Hb_007416_030--Hb_002864_050 Hb_001047_230 Hb_001047_230 Hb_007416_030--Hb_001047_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3172 4.84637 10.246 6.69054 10.1103 10.7161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.9874 33.995 11.5778 5.24806 6.30915

CAGE analysis