Hb_003683_120

Information

Type -
Description -
Location Contig3683: 158111-163651
Sequence    

Annotation

kegg
ID rcu:RCOM_1618830
description hypothetical protein
nr
ID XP_002512012.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LGJ5
description Plant cysteine oxidase 2 OS=Arabidopsis thaliana GN=PCO2 PE=1 SV=1
trembl
ID B9RE73
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1618830 PE=4 SV=1
Gene Ontology
ID GO:0016702
description 2-aminoethanethiol dioxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003683_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001427_200 0.0786267924 - - PREDICTED: uncharacterized protein LOC105637796 [Jatropha curcas]
3 Hb_026549_040 0.085068363 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
4 Hb_004934_110 0.0853454248 transcription factor TF Family: HMG hypothetical protein B456_002G115100 [Gossypium raimondii]
5 Hb_001292_020 0.0924364372 - - PREDICTED: keratin, type II cytoskeletal 5 isoform X1 [Sesamum indicum]
6 Hb_001246_060 0.0924684514 - - ATP binding protein, putative [Ricinus communis]
7 Hb_028486_030 0.0968361991 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
8 Hb_002686_020 0.0990336957 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
9 Hb_004048_110 0.0995663819 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
10 Hb_002963_020 0.099646851 - - conserved hypothetical protein [Ricinus communis]
11 Hb_012725_050 0.1000519417 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
12 Hb_003020_020 0.101471273 - - PREDICTED: dnaJ homolog subfamily B member 8 isoform X1 [Jatropha curcas]
13 Hb_000345_390 0.1022384451 - - hypothetical protein JCGZ_23349 [Jatropha curcas]
14 Hb_007416_030 0.1036870841 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
15 Hb_001268_420 0.1051923525 - - PREDICTED: uncharacterized protein LOC105630158 [Jatropha curcas]
16 Hb_002942_190 0.1079030461 - - poly(A) polymerase, putative [Ricinus communis]
17 Hb_001951_140 0.1079760571 - - PREDICTED: uncharacterized protein LOC105649757 isoform X1 [Jatropha curcas]
18 Hb_001105_030 0.108492551 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
19 Hb_003607_050 0.1088480005 - - PREDICTED: uncharacterized protein LOC105644428 [Jatropha curcas]
20 Hb_024682_010 0.1089358982 - - sterol isomerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003683_120 Hb_003683_120 Hb_001427_200 Hb_001427_200 Hb_003683_120--Hb_001427_200 Hb_026549_040 Hb_026549_040 Hb_003683_120--Hb_026549_040 Hb_004934_110 Hb_004934_110 Hb_003683_120--Hb_004934_110 Hb_001292_020 Hb_001292_020 Hb_003683_120--Hb_001292_020 Hb_001246_060 Hb_001246_060 Hb_003683_120--Hb_001246_060 Hb_028486_030 Hb_028486_030 Hb_003683_120--Hb_028486_030 Hb_001268_420 Hb_001268_420 Hb_001427_200--Hb_001268_420 Hb_032264_070 Hb_032264_070 Hb_001427_200--Hb_032264_070 Hb_004195_270 Hb_004195_270 Hb_001427_200--Hb_004195_270 Hb_001105_030 Hb_001105_030 Hb_001427_200--Hb_001105_030 Hb_012675_050 Hb_012675_050 Hb_001427_200--Hb_012675_050 Hb_002942_190 Hb_002942_190 Hb_026549_040--Hb_002942_190 Hb_026549_040--Hb_001292_020 Hb_000479_090 Hb_000479_090 Hb_026549_040--Hb_000479_090 Hb_002686_020 Hb_002686_020 Hb_026549_040--Hb_002686_020 Hb_000384_100 Hb_000384_100 Hb_026549_040--Hb_000384_100 Hb_026549_040--Hb_012675_050 Hb_004931_090 Hb_004931_090 Hb_004934_110--Hb_004931_090 Hb_000251_070 Hb_000251_070 Hb_004934_110--Hb_000251_070 Hb_004657_050 Hb_004657_050 Hb_004934_110--Hb_004657_050 Hb_000331_080 Hb_000331_080 Hb_004934_110--Hb_000331_080 Hb_003607_050 Hb_003607_050 Hb_004934_110--Hb_003607_050 Hb_000840_030 Hb_000840_030 Hb_004934_110--Hb_000840_030 Hb_001292_020--Hb_002942_190 Hb_001292_020--Hb_002686_020 Hb_004048_110 Hb_004048_110 Hb_001292_020--Hb_004048_110 Hb_008878_030 Hb_008878_030 Hb_001292_020--Hb_008878_030 Hb_002232_440 Hb_002232_440 Hb_001292_020--Hb_002232_440 Hb_001951_140 Hb_001951_140 Hb_001246_060--Hb_001951_140 Hb_001117_090 Hb_001117_090 Hb_001246_060--Hb_001117_090 Hb_001246_060--Hb_002686_020 Hb_002205_070 Hb_002205_070 Hb_001246_060--Hb_002205_070 Hb_001540_010 Hb_001540_010 Hb_001246_060--Hb_001540_010 Hb_001246_060--Hb_026549_040 Hb_000680_140 Hb_000680_140 Hb_028486_030--Hb_000680_140 Hb_000962_040 Hb_000962_040 Hb_028486_030--Hb_000962_040 Hb_004846_090 Hb_004846_090 Hb_028486_030--Hb_004846_090 Hb_007220_010 Hb_007220_010 Hb_028486_030--Hb_007220_010 Hb_028486_030--Hb_026549_040 Hb_028486_030--Hb_012675_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9098 3.96213 8.73679 4.73615 12.2086 10.0075
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.4303 28.9754 13.0682 4.69895 13.4473

CAGE analysis