Hb_003683_160

Information

Type -
Description -
Location Contig3683: 177088-181663
Sequence    

Annotation

kegg
ID rcu:RCOM_1618790
description hypothetical protein
nr
ID XP_012092924.1
description PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
swissprot
ID Q9FN50
description Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic OS=Arabidopsis thaliana GN=CPP1 PE=1 SV=1
trembl
ID A0A067JBF6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05827 PE=4 SV=1
Gene Ontology
ID GO:0005739
description PREDICTED: uncharacterized protein LOC105650622

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37890: 178550-181133 , PASA_asmbl_37891: 180637-180996 , PASA_asmbl_37892: 181365-181559
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003683_160 0.0 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
2 Hb_004324_070 0.065301235 - - protein phosphatase 2C [Hevea brasiliensis]
3 Hb_188279_010 0.0796269565 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Tarenaya hassleriana]
4 Hb_181288_020 0.0890456799 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
5 Hb_000069_110 0.0937266517 - - PREDICTED: nephrocystin-3-like isoform X2 [Jatropha curcas]
6 Hb_000080_190 0.0965840061 - - -
7 Hb_011571_010 0.1027018092 - - Metal tolerance protein C4, putative [Ricinus communis]
8 Hb_000046_320 0.103634176 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
9 Hb_112798_030 0.1040499586 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001847_020 0.1048424316 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Eucalyptus grandis]
11 Hb_007317_210 0.1050168575 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
12 Hb_004369_020 0.1050226385 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
13 Hb_000777_040 0.1053345669 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
14 Hb_004907_080 0.1057645942 - - zinc finger protein, putative [Ricinus communis]
15 Hb_006452_170 0.1063641035 - - -
16 Hb_000008_470 0.1080118881 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
17 Hb_009048_040 0.1095478754 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
18 Hb_000395_170 0.1099199868 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
19 Hb_032264_110 0.1102783541 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
20 Hb_004109_090 0.111484172 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003683_160 Hb_003683_160 Hb_004324_070 Hb_004324_070 Hb_003683_160--Hb_004324_070 Hb_188279_010 Hb_188279_010 Hb_003683_160--Hb_188279_010 Hb_181288_020 Hb_181288_020 Hb_003683_160--Hb_181288_020 Hb_000069_110 Hb_000069_110 Hb_003683_160--Hb_000069_110 Hb_000080_190 Hb_000080_190 Hb_003683_160--Hb_000080_190 Hb_011571_010 Hb_011571_010 Hb_003683_160--Hb_011571_010 Hb_000008_470 Hb_000008_470 Hb_004324_070--Hb_000008_470 Hb_000347_540 Hb_000347_540 Hb_004324_070--Hb_000347_540 Hb_112798_030 Hb_112798_030 Hb_004324_070--Hb_112798_030 Hb_006452_170 Hb_006452_170 Hb_004324_070--Hb_006452_170 Hb_004324_070--Hb_000069_110 Hb_000173_230 Hb_000173_230 Hb_188279_010--Hb_000173_230 Hb_001847_020 Hb_001847_020 Hb_188279_010--Hb_001847_020 Hb_007317_210 Hb_007317_210 Hb_188279_010--Hb_007317_210 Hb_188279_010--Hb_011571_010 Hb_009048_040 Hb_009048_040 Hb_188279_010--Hb_009048_040 Hb_000510_320 Hb_000510_320 Hb_181288_020--Hb_000510_320 Hb_000046_320 Hb_000046_320 Hb_181288_020--Hb_000046_320 Hb_004724_080 Hb_004724_080 Hb_181288_020--Hb_004724_080 Hb_000086_400 Hb_000086_400 Hb_181288_020--Hb_000086_400 Hb_000749_220 Hb_000749_220 Hb_181288_020--Hb_000749_220 Hb_011867_010 Hb_011867_010 Hb_000069_110--Hb_011867_010 Hb_011316_040 Hb_011316_040 Hb_000069_110--Hb_011316_040 Hb_002609_020 Hb_002609_020 Hb_000069_110--Hb_002609_020 Hb_132835_010 Hb_132835_010 Hb_000069_110--Hb_132835_010 Hb_001277_330 Hb_001277_330 Hb_000069_110--Hb_001277_330 Hb_000069_110--Hb_000510_320 Hb_002687_110 Hb_002687_110 Hb_000080_190--Hb_002687_110 Hb_005625_020 Hb_005625_020 Hb_000080_190--Hb_005625_020 Hb_000898_040 Hb_000898_040 Hb_000080_190--Hb_000898_040 Hb_004738_040 Hb_004738_040 Hb_000080_190--Hb_004738_040 Hb_000080_190--Hb_009048_040 Hb_000409_020 Hb_000409_020 Hb_000080_190--Hb_000409_020 Hb_011571_010--Hb_007317_210 Hb_011571_010--Hb_112798_030 Hb_000107_620 Hb_000107_620 Hb_011571_010--Hb_000107_620 Hb_006332_020 Hb_006332_020 Hb_011571_010--Hb_006332_020 Hb_001811_050 Hb_001811_050 Hb_011571_010--Hb_001811_050 Hb_006541_030 Hb_006541_030 Hb_011571_010--Hb_006541_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4974 1.74013 7.21288 4.98913 9.44858 10.0361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.89754 11.2827 15.984 4.12228 5.1338

CAGE analysis