Hb_003683_170

Information

Type -
Description -
Location Contig3683: 190228-193139
Sequence    

Annotation

kegg
ID rcu:RCOM_1618760
description hypothetical protein
nr
ID XP_002512005.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FN48
description Calcium sensing receptor, chloroplastic OS=Arabidopsis thaliana GN=CAS PE=1 SV=1
trembl
ID B9RE66
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1618760 PE=4 SV=1
Gene Ontology
ID GO:0005739
description calcium sensing chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37893: 190283-193214
cDNA
(Sanger)
(ID:Location)		 005_O11.ab1: 191414-193214 , 031_I09.ab1: 191444-193172

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003683_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000030_070 0.0359398311 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001287_020 0.0580442024 - - SulA [Manihot esculenta]
4 Hb_005618_030 0.0617781677 - - PREDICTED: cytochrome P450 734A1-like [Jatropha curcas]
5 Hb_001377_080 0.0641703048 - - PREDICTED: uncharacterized protein LOC105642864 [Jatropha curcas]
6 Hb_006555_020 0.0717194995 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
7 Hb_001638_060 0.0757516756 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
8 Hb_101133_030 0.076918983 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
9 Hb_000821_030 0.0773407185 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
10 Hb_008013_020 0.0829260075 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
11 Hb_001233_050 0.083395419 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
12 Hb_003921_020 0.084583751 - - hypothetical protein JCGZ_10628 [Jatropha curcas]
13 Hb_001916_110 0.0847724892 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
14 Hb_006775_100 0.0870550441 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
15 Hb_002078_280 0.087899976 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
16 Hb_000080_070 0.0881157927 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
17 Hb_000262_090 0.0890613786 - - Root phototropism protein, putative [Ricinus communis]
18 Hb_015807_120 0.0911551323 - - PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Jatropha curcas]
19 Hb_006261_020 0.0912350915 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
20 Hb_000749_140 0.091515705 - - PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal [Jatropha curcas]

Gene co-expression network

sample Hb_003683_170 Hb_003683_170 Hb_000030_070 Hb_000030_070 Hb_003683_170--Hb_000030_070 Hb_001287_020 Hb_001287_020 Hb_003683_170--Hb_001287_020 Hb_005618_030 Hb_005618_030 Hb_003683_170--Hb_005618_030 Hb_001377_080 Hb_001377_080 Hb_003683_170--Hb_001377_080 Hb_006555_020 Hb_006555_020 Hb_003683_170--Hb_006555_020 Hb_001638_060 Hb_001638_060 Hb_003683_170--Hb_001638_060 Hb_000030_070--Hb_005618_030 Hb_000030_070--Hb_001377_080 Hb_000030_070--Hb_001638_060 Hb_000030_070--Hb_006555_020 Hb_000030_070--Hb_001287_020 Hb_001287_020--Hb_005618_030 Hb_000080_070 Hb_000080_070 Hb_001287_020--Hb_000080_070 Hb_001287_020--Hb_001377_080 Hb_000510_180 Hb_000510_180 Hb_001287_020--Hb_000510_180 Hb_008013_020 Hb_008013_020 Hb_005618_030--Hb_008013_020 Hb_005618_030--Hb_006555_020 Hb_096267_010 Hb_096267_010 Hb_005618_030--Hb_096267_010 Hb_000937_010 Hb_000937_010 Hb_005618_030--Hb_000937_010 Hb_001377_080--Hb_006555_020 Hb_001377_080--Hb_005618_030 Hb_001377_080--Hb_096267_010 Hb_006555_020--Hb_096267_010 Hb_000011_510 Hb_000011_510 Hb_006555_020--Hb_000011_510 Hb_048476_090 Hb_048476_090 Hb_006555_020--Hb_048476_090 Hb_004235_070 Hb_004235_070 Hb_001638_060--Hb_004235_070 Hb_015807_120 Hb_015807_120 Hb_001638_060--Hb_015807_120 Hb_006261_020 Hb_006261_020 Hb_001638_060--Hb_006261_020 Hb_000210_210 Hb_000210_210 Hb_001638_060--Hb_000210_210 Hb_000821_030 Hb_000821_030 Hb_001638_060--Hb_000821_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.137285 3.82263 207.274 24.5448 0.0716107 0.28616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.104606 0.548612 0.0513373 3.57441 161.375

CAGE analysis