Hb_003683_200

Information

Type -
Description -
Location Contig3683: 219894-228043
Sequence    

Annotation

kegg
ID rcu:RCOM_1618700
description Phospholipid-transporting ATPase, putative (EC:3.6.3.1)
nr
ID XP_012092930.1
description PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
swissprot
ID Q9SX33
description Putative phospholipid-transporting ATPase 9 OS=Arabidopsis thaliana GN=ALA9 PE=3 SV=1
trembl
ID A0A067JKQ1
description Phospholipid-transporting ATPase OS=Jatropha curcas GN=JCGZ_05833 PE=3 SV=1
Gene Ontology
ID GO:0016021
description phospholipid-transporting atpase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37895: 219917-228036 , PASA_asmbl_37897: 227545-227829
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003683_200 0.0 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
2 Hb_000680_020 0.0763874273 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
3 Hb_000116_330 0.0948109776 - - PREDICTED: glutamate receptor 3.6-like [Jatropha curcas]
4 Hb_001836_010 0.1019216391 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
5 Hb_001856_110 0.1057612395 - - PREDICTED: cellulose synthase-like protein G2 [Populus euphratica]
6 Hb_004525_020 0.1064964907 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 6-like [Jatropha curcas]
7 Hb_002849_120 0.1103896862 - - ferric reductase oxidase [Manihot esculenta]
8 Hb_002818_070 0.112098994 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
9 Hb_071130_020 0.1135524875 - - -
10 Hb_000009_390 0.1144590404 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
11 Hb_171168_010 0.1152655603 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
12 Hb_000417_250 0.115306988 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
13 Hb_127661_010 0.119104997 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_001866_100 0.1205762122 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
15 Hb_003077_140 0.1215274126 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
16 Hb_007113_020 0.1224246483 - - -
17 Hb_006827_030 0.1239457811 - - oligopeptide transporter, putative [Ricinus communis]
18 Hb_033153_040 0.1270319981 - - o-methyltransferase, putative [Ricinus communis]
19 Hb_000191_100 0.127799615 - - cytochrome P450, putative [Ricinus communis]
20 Hb_016637_020 0.1303955076 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]

Gene co-expression network

sample Hb_003683_200 Hb_003683_200 Hb_000680_020 Hb_000680_020 Hb_003683_200--Hb_000680_020 Hb_000116_330 Hb_000116_330 Hb_003683_200--Hb_000116_330 Hb_001836_010 Hb_001836_010 Hb_003683_200--Hb_001836_010 Hb_001856_110 Hb_001856_110 Hb_003683_200--Hb_001856_110 Hb_004525_020 Hb_004525_020 Hb_003683_200--Hb_004525_020 Hb_002849_120 Hb_002849_120 Hb_003683_200--Hb_002849_120 Hb_000680_020--Hb_002849_120 Hb_033153_040 Hb_033153_040 Hb_000680_020--Hb_033153_040 Hb_127661_010 Hb_127661_010 Hb_000680_020--Hb_127661_010 Hb_071130_020 Hb_071130_020 Hb_000680_020--Hb_071130_020 Hb_003077_140 Hb_003077_140 Hb_000680_020--Hb_003077_140 Hb_000116_330--Hb_004525_020 Hb_000417_250 Hb_000417_250 Hb_000116_330--Hb_000417_250 Hb_001160_020 Hb_001160_020 Hb_000116_330--Hb_001160_020 Hb_000116_330--Hb_000680_020 Hb_000261_370 Hb_000261_370 Hb_000116_330--Hb_000261_370 Hb_002818_070 Hb_002818_070 Hb_001836_010--Hb_002818_070 Hb_000009_390 Hb_000009_390 Hb_001836_010--Hb_000009_390 Hb_007035_010 Hb_007035_010 Hb_001836_010--Hb_007035_010 Hb_000331_220 Hb_000331_220 Hb_001836_010--Hb_000331_220 Hb_006827_030 Hb_006827_030 Hb_001836_010--Hb_006827_030 Hb_001856_110--Hb_000009_390 Hb_001856_110--Hb_071130_020 Hb_031949_010 Hb_031949_010 Hb_001856_110--Hb_031949_010 Hb_001856_110--Hb_000680_020 Hb_003494_180 Hb_003494_180 Hb_001856_110--Hb_003494_180 Hb_000027_100 Hb_000027_100 Hb_004525_020--Hb_000027_100 Hb_000365_220 Hb_000365_220 Hb_004525_020--Hb_000365_220 Hb_004525_020--Hb_001160_020 Hb_004525_020--Hb_000417_250 Hb_002849_120--Hb_033153_040 Hb_001153_090 Hb_001153_090 Hb_002849_120--Hb_001153_090 Hb_003849_030 Hb_003849_030 Hb_002849_120--Hb_003849_030 Hb_002849_120--Hb_001160_020 Hb_002849_120--Hb_127661_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0526773 11.9609 8.86706 3.50925 0.00825435 0.0235699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0499506 0.086482 0.287158 7.39946 16.2914

CAGE analysis