Hb_003687_030

Information

Type -
Description -
Location Contig3687: 18470-20049
Sequence    

Annotation

kegg
ID rcu:RCOM_1169120
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002528831.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID Q9LW60
description Putative protein phosphatase 2C-like protein 44 OS=Arabidopsis thaliana GN=At3g23360 PE=5 SV=1
trembl
ID B9SS62
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_1169120 PE=4 SV=1
Gene Ontology
ID GO:0004722
description protein phosphatase 2c-like protein 44

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37905: 18587-19302 , PASA_asmbl_37906: 19456-19987
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003687_030 0.0 - - protein phosphatase 2c, putative [Ricinus communis]
2 Hb_001675_030 0.1640556239 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000886_030 0.185554369 - - PREDICTED: uncharacterized protein LOC105113410 [Populus euphratica]
4 Hb_001728_020 0.1863422778 - - PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Jatropha curcas]
5 Hb_172632_050 0.1869300704 - - PREDICTED: uncharacterized protein LOC105646134 [Jatropha curcas]
6 Hb_028707_070 0.1976377399 - - short-chain dehydrogenase, putative [Ricinus communis]
7 Hb_000529_280 0.2031825072 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
8 Hb_003020_180 0.2063284788 - - PREDICTED: probable protein phosphatase 2C 24 [Jatropha curcas]
9 Hb_001507_030 0.2137919221 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
10 Hb_012725_120 0.2180396613 - - PREDICTED: stress enhanced protein 2, chloroplastic [Jatropha curcas]
11 Hb_018790_080 0.2186190045 - - hypothetical protein POPTR_0011s06335g [Populus trichocarpa]
12 Hb_000645_200 0.2186732585 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
13 Hb_080362_010 0.2190358026 - - hypothetical protein JCGZ_14167 [Jatropha curcas]
14 Hb_001117_120 0.2202139289 - - chloride channel clc, putative [Ricinus communis]
15 Hb_104764_010 0.2217172659 - - hypothetical protein JCGZ_16024 [Jatropha curcas]
16 Hb_012807_130 0.2227734027 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
17 Hb_011909_140 0.2237370716 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
18 Hb_005663_070 0.2249440052 - - dehydrin protein [Manihot esculenta]
19 Hb_004724_210 0.2257557804 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000891_030 0.2266302163 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]

Gene co-expression network

sample Hb_003687_030 Hb_003687_030 Hb_001675_030 Hb_001675_030 Hb_003687_030--Hb_001675_030 Hb_000886_030 Hb_000886_030 Hb_003687_030--Hb_000886_030 Hb_001728_020 Hb_001728_020 Hb_003687_030--Hb_001728_020 Hb_172632_050 Hb_172632_050 Hb_003687_030--Hb_172632_050 Hb_028707_070 Hb_028707_070 Hb_003687_030--Hb_028707_070 Hb_000529_280 Hb_000529_280 Hb_003687_030--Hb_000529_280 Hb_001675_030--Hb_172632_050 Hb_001675_030--Hb_000529_280 Hb_012807_130 Hb_012807_130 Hb_001675_030--Hb_012807_130 Hb_001675_030--Hb_028707_070 Hb_001675_030--Hb_001728_020 Hb_000886_030--Hb_001675_030 Hb_000886_030--Hb_000529_280 Hb_000886_030--Hb_172632_050 Hb_004787_040 Hb_004787_040 Hb_000886_030--Hb_004787_040 Hb_000465_510 Hb_000465_510 Hb_000886_030--Hb_000465_510 Hb_001728_020--Hb_000529_280 Hb_006060_020 Hb_006060_020 Hb_001728_020--Hb_006060_020 Hb_026198_010 Hb_026198_010 Hb_001728_020--Hb_026198_010 Hb_001728_020--Hb_172632_050 Hb_000732_190 Hb_000732_190 Hb_001728_020--Hb_000732_190 Hb_002686_150 Hb_002686_150 Hb_001728_020--Hb_002686_150 Hb_172632_050--Hb_006060_020 Hb_006643_020 Hb_006643_020 Hb_172632_050--Hb_006643_020 Hb_172632_050--Hb_000529_280 Hb_004449_180 Hb_004449_180 Hb_172632_050--Hb_004449_180 Hb_000139_470 Hb_000139_470 Hb_172632_050--Hb_000139_470 Hb_000979_110 Hb_000979_110 Hb_028707_070--Hb_000979_110 Hb_001153_180 Hb_001153_180 Hb_028707_070--Hb_001153_180 Hb_006816_480 Hb_006816_480 Hb_028707_070--Hb_006816_480 Hb_004453_080 Hb_004453_080 Hb_028707_070--Hb_004453_080 Hb_012725_120 Hb_012725_120 Hb_028707_070--Hb_012725_120 Hb_000699_230 Hb_000699_230 Hb_028707_070--Hb_000699_230 Hb_000723_230 Hb_000723_230 Hb_000529_280--Hb_000723_230 Hb_000645_200 Hb_000645_200 Hb_000529_280--Hb_000645_200 Hb_000529_280--Hb_000139_470 Hb_093458_010 Hb_093458_010 Hb_000529_280--Hb_093458_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.209312 6.76109 3.41138 4.50757 0.109028 0.296602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.50993 5.17778 0.599613 2.29639 1.08284

CAGE analysis