Hb_003687_050

Information

Type -
Description -
Location Contig3687: 37911-39219
Sequence    

Annotation

kegg
ID rcu:RCOM_1169250
description hypothetical protein
nr
ID XP_002528834.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8CHU3
description Epsin-2 OS=Mus musculus GN=Epn2 PE=1 SV=1
trembl
ID B9SS65
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1169250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003687_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002596_100 0.0001381739 - - -
3 Hb_000441_240 0.0005441108 - - hypothetical protein ZEAMMB73_005804 [Zea mays]
4 Hb_001031_070 0.0007359614 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas]
5 Hb_071079_030 0.0011239049 transcription factor TF Family: MYB-related PREDICTED: transcription factor TRY-like [Populus euphratica]
6 Hb_001031_100 0.001191327 - - -
7 Hb_000724_010 0.001707067 - - PREDICTED: uncharacterized protein LOC105134348 [Populus euphratica]
8 Hb_000938_010 0.0023756517 - - polyprotein [Oryza australiensis]
9 Hb_080359_020 0.0024112097 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
10 Hb_027556_050 0.0025757861 - - hypothetical protein PHAVU_001G166100g [Phaseolus vulgaris]
11 Hb_000345_090 0.0030769383 - - Cell cycle checkpoint control protein family isoform 5 [Theobroma cacao]
12 Hb_159542_010 0.0048953481 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
13 Hb_000705_320 0.0057664459 - - Transcriptional regulator SUPERMAN, putative [Ricinus communis]
14 Hb_000696_180 0.0063450907 - - cysteine protease, putative [Ricinus communis]
15 Hb_005625_030 0.0088213435 - - ribosomal protein S12 (mitochondrion) [Chrysobalanus icaco]
16 Hb_070810_010 0.0089904397 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
17 Hb_011444_050 0.009347019 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
18 Hb_000329_240 0.0098619542 transcription factor TF Family: PLATZ zinc ion binding protein, putative [Ricinus communis]
19 Hb_073174_010 0.0100994041 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
20 Hb_163720_010 0.0108304566 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]

Gene co-expression network

sample Hb_003687_050 Hb_003687_050 Hb_002596_100 Hb_002596_100 Hb_003687_050--Hb_002596_100 Hb_000441_240 Hb_000441_240 Hb_003687_050--Hb_000441_240 Hb_001031_070 Hb_001031_070 Hb_003687_050--Hb_001031_070 Hb_071079_030 Hb_071079_030 Hb_003687_050--Hb_071079_030 Hb_001031_100 Hb_001031_100 Hb_003687_050--Hb_001031_100 Hb_000724_010 Hb_000724_010 Hb_003687_050--Hb_000724_010 Hb_002596_100--Hb_000441_240 Hb_002596_100--Hb_001031_070 Hb_002596_100--Hb_001031_100 Hb_002596_100--Hb_071079_030 Hb_002596_100--Hb_000724_010 Hb_000441_240--Hb_001031_070 Hb_000441_240--Hb_071079_030 Hb_000441_240--Hb_001031_100 Hb_000938_010 Hb_000938_010 Hb_000441_240--Hb_000938_010 Hb_001031_070--Hb_071079_030 Hb_001031_070--Hb_000938_010 Hb_001031_070--Hb_001031_100 Hb_071079_030--Hb_000938_010 Hb_071079_030--Hb_001031_100 Hb_001031_100--Hb_000724_010 Hb_080359_020 Hb_080359_020 Hb_001031_100--Hb_080359_020 Hb_027556_050 Hb_027556_050 Hb_001031_100--Hb_027556_050 Hb_000724_010--Hb_080359_020 Hb_000724_010--Hb_027556_050 Hb_000345_090 Hb_000345_090 Hb_000724_010--Hb_000345_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0350223 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0339062 0

CAGE analysis