Hb_003687_060

Information

Type -
Description -
Location Contig3687: 43142-43771
Sequence    

Annotation

kegg
ID rcu:RCOM_1169360
description hypothetical protein
nr
ID XP_002528835.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SS66
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1169360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003687_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003038_020 0.0007264983 - - unnamed protein product [Coffea canephora]
3 Hb_005333_090 0.0014849319 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
4 Hb_005356_020 0.0037081366 - - glutaredoxin, grx, putative [Ricinus communis]
5 Hb_001552_010 0.0044375115 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004899_240 0.0047804778 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002157_110 0.0078503156 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
8 Hb_010128_140 0.0079091822 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
9 Hb_003849_210 0.0104549076 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
10 Hb_036116_010 0.0132159682 - - JHL22C18.10 [Jatropha curcas]
11 Hb_090521_010 0.0149263575 - - Major allergen Pru ar, putative [Ricinus communis]
12 Hb_015447_010 0.0167254602 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
13 Hb_000471_130 0.0174041004 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002217_010 0.0182980694 - - Peroxiredoxin, putative [Ricinus communis]
15 Hb_006198_160 0.0189348862 - - hypothetical protein POPTR_0002s24290g [Populus trichocarpa]
16 Hb_001002_010 0.0232178857 - - conserved hypothetical protein [Ricinus communis]
17 Hb_101724_010 0.0241980889 - - glutamate receptor family protein [Populus trichocarpa]
18 Hb_006663_120 0.0244214778 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000679_180 0.0247184451 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
20 Hb_007227_020 0.0251373915 - - -

Gene co-expression network

sample Hb_003687_060 Hb_003687_060 Hb_003038_020 Hb_003038_020 Hb_003687_060--Hb_003038_020 Hb_005333_090 Hb_005333_090 Hb_003687_060--Hb_005333_090 Hb_005356_020 Hb_005356_020 Hb_003687_060--Hb_005356_020 Hb_001552_010 Hb_001552_010 Hb_003687_060--Hb_001552_010 Hb_004899_240 Hb_004899_240 Hb_003687_060--Hb_004899_240 Hb_002157_110 Hb_002157_110 Hb_003687_060--Hb_002157_110 Hb_003038_020--Hb_005333_090 Hb_003038_020--Hb_004899_240 Hb_003038_020--Hb_005356_020 Hb_003038_020--Hb_001552_010 Hb_003038_020--Hb_002157_110 Hb_005333_090--Hb_004899_240 Hb_005333_090--Hb_005356_020 Hb_005333_090--Hb_001552_010 Hb_005333_090--Hb_002157_110 Hb_005356_020--Hb_001552_010 Hb_010128_140 Hb_010128_140 Hb_005356_020--Hb_010128_140 Hb_003849_210 Hb_003849_210 Hb_005356_020--Hb_003849_210 Hb_001552_010--Hb_010128_140 Hb_001552_010--Hb_003849_210 Hb_004899_240--Hb_002157_110 Hb_036116_010 Hb_036116_010 Hb_004899_240--Hb_036116_010 Hb_004899_240--Hb_005356_020 Hb_002157_110--Hb_036116_010 Hb_090521_010 Hb_090521_010 Hb_002157_110--Hb_090521_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0327399 0.233962 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis