Hb_003687_100

Information

Type -
Description -
Location Contig3687: 70473-72764
Sequence    

Annotation

kegg
ID vvi:100262037
description putative pentatricopeptide repeat-containing protein At3g23330
nr
ID XP_012069857.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
swissprot
ID Q9LW63
description Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
trembl
ID A0A067KW32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02345 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at3g23330

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37919: 73401-75234
cDNA
(Sanger)
(ID:Location)		 018_N23.ab1: 73401-75239 , 034_F07.ab1: 73472-75234 , 036_H07.ab1: 73472-75234 , 040_O10.ab1: 73472-75234 , 051_J18.ab1: 73488-75234

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003687_100 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
2 Hb_000635_220 0.0631192844 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
3 Hb_000236_140 0.0698606938 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
4 Hb_002496_040 0.079860503 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03380, mitochondrial [Jatropha curcas]
5 Hb_007075_050 0.0883058342 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_007416_270 0.0890066514 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
7 Hb_000343_130 0.0902664964 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
8 Hb_016901_010 0.0914358642 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
9 Hb_001975_160 0.0924517328 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_001266_060 0.0932621731 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g47840 [Jatropha curcas]
11 Hb_001226_020 0.0941583473 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Jatropha curcas]
12 Hb_001085_170 0.0972001456 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
13 Hb_007747_200 0.0987503123 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
14 Hb_163145_020 0.0990002209 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
15 Hb_000019_130 0.100534707 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
16 Hb_002006_090 0.1006288439 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
17 Hb_000935_050 0.1007189705 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
18 Hb_006816_140 0.1009942742 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Jatropha curcas]
19 Hb_000934_270 0.1016078803 - - PREDICTED: pentatricopeptide repeat-containing protein At3g21470 [Populus euphratica]
20 Hb_001454_190 0.102648682 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]

Gene co-expression network

sample Hb_003687_100 Hb_003687_100 Hb_000635_220 Hb_000635_220 Hb_003687_100--Hb_000635_220 Hb_000236_140 Hb_000236_140 Hb_003687_100--Hb_000236_140 Hb_002496_040 Hb_002496_040 Hb_003687_100--Hb_002496_040 Hb_007075_050 Hb_007075_050 Hb_003687_100--Hb_007075_050 Hb_007416_270 Hb_007416_270 Hb_003687_100--Hb_007416_270 Hb_000343_130 Hb_000343_130 Hb_003687_100--Hb_000343_130 Hb_000635_220--Hb_000343_130 Hb_163145_020 Hb_163145_020 Hb_000635_220--Hb_163145_020 Hb_007747_200 Hb_007747_200 Hb_000635_220--Hb_007747_200 Hb_000317_280 Hb_000317_280 Hb_000635_220--Hb_000317_280 Hb_006846_110 Hb_006846_110 Hb_000635_220--Hb_006846_110 Hb_004128_180 Hb_004128_180 Hb_000236_140--Hb_004128_180 Hb_000236_140--Hb_007416_270 Hb_000479_130 Hb_000479_130 Hb_000236_140--Hb_000479_130 Hb_000236_140--Hb_007075_050 Hb_000172_560 Hb_000172_560 Hb_000236_140--Hb_000172_560 Hb_000362_120 Hb_000362_120 Hb_002496_040--Hb_000362_120 Hb_002205_190 Hb_002205_190 Hb_002496_040--Hb_002205_190 Hb_001266_060 Hb_001266_060 Hb_002496_040--Hb_001266_060 Hb_002496_040--Hb_000343_130 Hb_002496_040--Hb_000635_220 Hb_000935_050 Hb_000935_050 Hb_007075_050--Hb_000935_050 Hb_119600_040 Hb_119600_040 Hb_007075_050--Hb_119600_040 Hb_000019_130 Hb_000019_130 Hb_007075_050--Hb_000019_130 Hb_000019_060 Hb_000019_060 Hb_007075_050--Hb_000019_060 Hb_001002_030 Hb_001002_030 Hb_007416_270--Hb_001002_030 Hb_000865_060 Hb_000865_060 Hb_007416_270--Hb_000865_060 Hb_007416_270--Hb_000479_130 Hb_008695_210 Hb_008695_210 Hb_007416_270--Hb_008695_210 Hb_016901_010 Hb_016901_010 Hb_000343_130--Hb_016901_010 Hb_000343_130--Hb_007747_200 Hb_000343_130--Hb_000317_280 Hb_002006_090 Hb_002006_090 Hb_000343_130--Hb_002006_090 Hb_000111_360 Hb_000111_360 Hb_000343_130--Hb_000111_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.69047 1.89976 0.397309 0.873401 2.66224 2.74415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.3113 2.8885 6.92103 2.18628 1.45884

CAGE analysis