Hb_003687_110

Information

Type -
Description -
Location Contig3687: 73375-75013
Sequence    

Annotation

kegg
ID mdm:103428661
description uncharacterized protein At4g14342
nr
ID XP_008365013.1
description PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
swissprot
ID P58728
description Uncharacterized protein At4g14342 OS=Arabidopsis thaliana GN=At4g14342 PE=3 SV=1
trembl
ID I1QH63
description Uncharacterized protein (Fragment) OS=Oryza glaberrima PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37919: 73401-75234 , PASA_asmbl_37920: 74314-74574
cDNA
(Sanger)
(ID:Location)		 018_N23.ab1: 73401-75239 , 034_F07.ab1: 73472-75234 , 036_H07.ab1: 73472-75234 , 040_O10.ab1: 73472-75234 , 051_J18.ab1: 73488-75234

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003687_110 0.0 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
2 Hb_002874_190 0.0681894643 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
3 Hb_165132_010 0.0686934667 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
4 Hb_010180_020 0.0714233233 - - hypothetical protein glysoja_030394 [Glycine soja]
5 Hb_001604_080 0.0716355768 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
6 Hb_002007_060 0.0729140339 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
7 Hb_002411_170 0.074599331 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
8 Hb_003055_120 0.0752055552 - - Protein C20orf11, putative [Ricinus communis]
9 Hb_063716_050 0.0773040455 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
10 Hb_000103_560 0.07748145 - - ADP-ribosylation factor, putative [Ricinus communis]
11 Hb_168054_010 0.0786682676 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
12 Hb_001269_680 0.0795440496 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
13 Hb_001314_100 0.0799560511 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
14 Hb_005539_350 0.0800765637 - - conserved hypothetical protein [Ricinus communis]
15 Hb_018133_060 0.080259136 - - PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Jatropha curcas]
16 Hb_007778_030 0.081506375 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
17 Hb_001369_660 0.081768831 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
18 Hb_003939_080 0.082938437 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000473_040 0.0850109375 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
20 Hb_000163_160 0.086043015 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]

Gene co-expression network

sample Hb_003687_110 Hb_003687_110 Hb_002874_190 Hb_002874_190 Hb_003687_110--Hb_002874_190 Hb_165132_010 Hb_165132_010 Hb_003687_110--Hb_165132_010 Hb_010180_020 Hb_010180_020 Hb_003687_110--Hb_010180_020 Hb_001604_080 Hb_001604_080 Hb_003687_110--Hb_001604_080 Hb_002007_060 Hb_002007_060 Hb_003687_110--Hb_002007_060 Hb_002411_170 Hb_002411_170 Hb_003687_110--Hb_002411_170 Hb_003055_120 Hb_003055_120 Hb_002874_190--Hb_003055_120 Hb_005539_350 Hb_005539_350 Hb_002874_190--Hb_005539_350 Hb_002874_190--Hb_165132_010 Hb_006541_030 Hb_006541_030 Hb_002874_190--Hb_006541_030 Hb_000840_030 Hb_000840_030 Hb_002874_190--Hb_000840_030 Hb_134949_020 Hb_134949_020 Hb_165132_010--Hb_134949_020 Hb_001662_070 Hb_001662_070 Hb_165132_010--Hb_001662_070 Hb_033594_110 Hb_033594_110 Hb_165132_010--Hb_033594_110 Hb_002518_050 Hb_002518_050 Hb_165132_010--Hb_002518_050 Hb_002864_050 Hb_002864_050 Hb_165132_010--Hb_002864_050 Hb_010180_020--Hb_001604_080 Hb_004545_060 Hb_004545_060 Hb_010180_020--Hb_004545_060 Hb_004306_020 Hb_004306_020 Hb_010180_020--Hb_004306_020 Hb_010180_020--Hb_002411_170 Hb_000024_080 Hb_000024_080 Hb_010180_020--Hb_000024_080 Hb_000815_040 Hb_000815_040 Hb_010180_020--Hb_000815_040 Hb_001604_080--Hb_000815_040 Hb_000103_560 Hb_000103_560 Hb_001604_080--Hb_000103_560 Hb_063716_050 Hb_063716_050 Hb_001604_080--Hb_063716_050 Hb_000926_250 Hb_000926_250 Hb_001604_080--Hb_000926_250 Hb_000529_190 Hb_000529_190 Hb_001604_080--Hb_000529_190 Hb_023226_040 Hb_023226_040 Hb_002007_060--Hb_023226_040 Hb_000866_270 Hb_000866_270 Hb_002007_060--Hb_000866_270 Hb_001259_090 Hb_001259_090 Hb_002007_060--Hb_001259_090 Hb_001301_160 Hb_001301_160 Hb_002007_060--Hb_001301_160 Hb_000000_160 Hb_000000_160 Hb_002007_060--Hb_000000_160 Hb_002007_060--Hb_005539_350 Hb_004440_050 Hb_004440_050 Hb_002411_170--Hb_004440_050 Hb_003038_030 Hb_003038_030 Hb_002411_170--Hb_003038_030 Hb_125000_010 Hb_125000_010 Hb_002411_170--Hb_125000_010 Hb_148912_010 Hb_148912_010 Hb_002411_170--Hb_148912_010 Hb_002411_170--Hb_001604_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
165.735 58.7531 85.3407 94.6906 125.855 188.997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
165.304 266.435 140.721 36.4312 41.0349

CAGE analysis