Hb_003687_150

Information

Type -
Description -
Location Contig3687: 109455-114450
Sequence    

Annotation

kegg
ID pop:POPTR_0010s08150g
description zinc finger family protein
nr
ID XP_012069849.1
description PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
swissprot
ID Q4FE47
description Putative E3 ubiquitin-protein ligase XBAT35 OS=Arabidopsis thaliana GN=XBAT35 PE=2 SV=1
trembl
ID A0A067KW28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02340 PE=4 SV=1
Gene Ontology
ID GO:0005515
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37935: 109507-124017 , PASA_asmbl_37936: 112087-114338 , PASA_asmbl_37937: 112087-114338
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003687_150 0.0 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
2 Hb_027073_050 0.1053579352 - - PREDICTED: uncharacterized protein LOC105635813 isoform X2 [Jatropha curcas]
3 Hb_008544_010 0.1080664869 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
4 Hb_002016_100 0.1105307606 - - Small nuclear ribonucleoprotein SM D3, putative [Ricinus communis]
5 Hb_162275_030 0.1134238446 - - PREDICTED: uncharacterized protein LOC105646638 [Jatropha curcas]
6 Hb_001080_280 0.1149107011 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
7 Hb_001904_090 0.1150335494 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
8 Hb_000648_110 0.1158628549 - - PREDICTED: D-xylose-proton symporter-like 3, chloroplastic [Jatropha curcas]
9 Hb_019516_080 0.1159629464 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003732_010 0.1186976036 - - hypothetical protein CHLNCDRAFT_58243 [Chlorella variabilis]
11 Hb_000123_170 0.1193018922 - - Rab3 [Hevea brasiliensis]
12 Hb_000053_100 0.120025709 - - PREDICTED: uncharacterized protein LOC105642071 [Jatropha curcas]
13 Hb_001105_070 0.1208779987 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
14 Hb_001833_110 0.1251625253 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005433_040 0.1264365637 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
16 Hb_010042_010 0.1269146626 - - Urease accessory protein ureD, putative [Ricinus communis]
17 Hb_011457_090 0.1286858409 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
18 Hb_001114_130 0.1290915089 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP-like isoform X1 [Jatropha curcas]
19 Hb_001461_010 0.1298937806 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
20 Hb_001700_030 0.1315448944 transcription factor TF Family: ULT PREDICTED: protein ULTRAPETALA 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003687_150 Hb_003687_150 Hb_027073_050 Hb_027073_050 Hb_003687_150--Hb_027073_050 Hb_008544_010 Hb_008544_010 Hb_003687_150--Hb_008544_010 Hb_002016_100 Hb_002016_100 Hb_003687_150--Hb_002016_100 Hb_162275_030 Hb_162275_030 Hb_003687_150--Hb_162275_030 Hb_001080_280 Hb_001080_280 Hb_003687_150--Hb_001080_280 Hb_001904_090 Hb_001904_090 Hb_003687_150--Hb_001904_090 Hb_001461_010 Hb_001461_010 Hb_027073_050--Hb_001461_010 Hb_006569_100 Hb_006569_100 Hb_027073_050--Hb_006569_100 Hb_002918_290 Hb_002918_290 Hb_027073_050--Hb_002918_290 Hb_027073_050--Hb_001904_090 Hb_001191_090 Hb_001191_090 Hb_027073_050--Hb_001191_090 Hb_017413_010 Hb_017413_010 Hb_027073_050--Hb_017413_010 Hb_004374_140 Hb_004374_140 Hb_008544_010--Hb_004374_140 Hb_008544_010--Hb_001461_010 Hb_000172_030 Hb_000172_030 Hb_008544_010--Hb_000172_030 Hb_004336_050 Hb_004336_050 Hb_008544_010--Hb_004336_050 Hb_008544_010--Hb_001191_090 Hb_000046_290 Hb_000046_290 Hb_008544_010--Hb_000046_290 Hb_000025_120 Hb_000025_120 Hb_002016_100--Hb_000025_120 Hb_000668_040 Hb_000668_040 Hb_002016_100--Hb_000668_040 Hb_020400_050 Hb_020400_050 Hb_002016_100--Hb_020400_050 Hb_001833_110 Hb_001833_110 Hb_002016_100--Hb_001833_110 Hb_001105_070 Hb_001105_070 Hb_002016_100--Hb_001105_070 Hb_000496_060 Hb_000496_060 Hb_002016_100--Hb_000496_060 Hb_001006_180 Hb_001006_180 Hb_162275_030--Hb_001006_180 Hb_001762_060 Hb_001762_060 Hb_162275_030--Hb_001762_060 Hb_002735_060 Hb_002735_060 Hb_162275_030--Hb_002735_060 Hb_002119_120 Hb_002119_120 Hb_162275_030--Hb_002119_120 Hb_007382_150 Hb_007382_150 Hb_162275_030--Hb_007382_150 Hb_000069_550 Hb_000069_550 Hb_162275_030--Hb_000069_550 Hb_004705_120 Hb_004705_120 Hb_001080_280--Hb_004705_120 Hb_001519_030 Hb_001519_030 Hb_001080_280--Hb_001519_030 Hb_000635_150 Hb_000635_150 Hb_001080_280--Hb_000635_150 Hb_000123_170 Hb_000123_170 Hb_001080_280--Hb_000123_170 Hb_001080_280--Hb_001105_070 Hb_011953_020 Hb_011953_020 Hb_001080_280--Hb_011953_020 Hb_001396_100 Hb_001396_100 Hb_001904_090--Hb_001396_100 Hb_027654_050 Hb_027654_050 Hb_001904_090--Hb_027654_050 Hb_001904_090--Hb_001519_030 Hb_001904_090--Hb_000123_170 Hb_006831_120 Hb_006831_120 Hb_001904_090--Hb_006831_120 Hb_008616_070 Hb_008616_070 Hb_001904_090--Hb_008616_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.5554 5.97628 15.7447 44.9356 26.6936 36.1932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
100.173 49.7206 81.7864 19.7925 29.6314

CAGE analysis