Hb_003687_200

Information

Type -
Description -
Location Contig3687: 144952-145641
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16680g
description POPTRDRAFT_564943; hypothetical protein
nr
ID XP_012069838.1
description PREDICTED: uncharacterized protein LOC105632139 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L756
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02333 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37939: 144963-145833
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003687_200 0.0 - - PREDICTED: uncharacterized protein LOC105632139 [Jatropha curcas]
2 Hb_003304_050 0.1210123389 - - PREDICTED: uncharacterized protein LOC105633679 isoform X1 [Jatropha curcas]
3 Hb_000641_030 0.1439854553 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
4 Hb_017111_010 0.1500700073 - - PREDICTED: inositol transporter 4 [Jatropha curcas]
5 Hb_000186_100 0.1712730716 - - PREDICTED: uncharacterized protein LOC105649284 isoform X1 [Jatropha curcas]
6 Hb_000009_640 0.1719659989 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_12318 [Jatropha curcas]
7 Hb_000416_100 0.1736112988 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
8 Hb_002388_060 0.1751112397 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001565_100 0.1822630676 - - unnamed protein product [Coffea canephora]
10 Hb_002078_430 0.1839737808 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
11 Hb_000376_150 0.1853486103 - - O-acyltransferase WSD1 [Gossypium arboreum]
12 Hb_000056_120 0.1913223625 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
13 Hb_001195_110 0.1921707199 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
14 Hb_007545_210 0.1922396934 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
15 Hb_000613_020 0.1963736071 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
16 Hb_002027_220 0.199763334 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
17 Hb_000548_030 0.1997983143 rubber biosynthesis Gene Name: CPT5 PREDICTED: dehydrodolichyl diphosphate synthase 6-like [Beta vulgaris subsp. vulgaris]
18 Hb_004254_040 0.2023399295 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
19 Hb_001178_020 0.2027332294 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 3 [Jatropha curcas]
20 Hb_000959_360 0.2030382953 - - transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_003687_200 Hb_003687_200 Hb_003304_050 Hb_003304_050 Hb_003687_200--Hb_003304_050 Hb_000641_030 Hb_000641_030 Hb_003687_200--Hb_000641_030 Hb_017111_010 Hb_017111_010 Hb_003687_200--Hb_017111_010 Hb_000186_100 Hb_000186_100 Hb_003687_200--Hb_000186_100 Hb_000009_640 Hb_000009_640 Hb_003687_200--Hb_000009_640 Hb_000416_100 Hb_000416_100 Hb_003687_200--Hb_000416_100 Hb_003304_050--Hb_000641_030 Hb_000548_030 Hb_000548_030 Hb_003304_050--Hb_000548_030 Hb_026447_030 Hb_026447_030 Hb_003304_050--Hb_026447_030 Hb_003654_010 Hb_003654_010 Hb_003304_050--Hb_003654_010 Hb_002027_220 Hb_002027_220 Hb_003304_050--Hb_002027_220 Hb_000376_110 Hb_000376_110 Hb_000641_030--Hb_000376_110 Hb_000376_150 Hb_000376_150 Hb_000641_030--Hb_000376_150 Hb_000920_140 Hb_000920_140 Hb_000641_030--Hb_000920_140 Hb_000641_030--Hb_000416_100 Hb_017111_010--Hb_000186_100 Hb_000523_020 Hb_000523_020 Hb_017111_010--Hb_000523_020 Hb_002388_060 Hb_002388_060 Hb_017111_010--Hb_002388_060 Hb_007545_210 Hb_007545_210 Hb_017111_010--Hb_007545_210 Hb_126669_010 Hb_126669_010 Hb_017111_010--Hb_126669_010 Hb_000186_100--Hb_002388_060 Hb_000186_100--Hb_007545_210 Hb_040506_010 Hb_040506_010 Hb_000186_100--Hb_040506_010 Hb_032264_130 Hb_032264_130 Hb_000186_100--Hb_032264_130 Hb_004254_040 Hb_004254_040 Hb_000009_640--Hb_004254_040 Hb_004232_010 Hb_004232_010 Hb_000009_640--Hb_004232_010 Hb_000172_610 Hb_000172_610 Hb_000009_640--Hb_000172_610 Hb_001259_030 Hb_001259_030 Hb_000009_640--Hb_001259_030 Hb_002078_430 Hb_002078_430 Hb_000009_640--Hb_002078_430 Hb_001140_080 Hb_001140_080 Hb_000009_640--Hb_001140_080 Hb_001825_010 Hb_001825_010 Hb_000416_100--Hb_001825_010 Hb_000416_100--Hb_002388_060 Hb_000416_100--Hb_007545_210 Hb_000714_020 Hb_000714_020 Hb_000416_100--Hb_000714_020 Hb_004738_090 Hb_004738_090 Hb_000416_100--Hb_004738_090 Hb_000365_350 Hb_000365_350 Hb_000416_100--Hb_000365_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
92.5286 3.86924 4.69508 9.19948 28.5455 39.4415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.6341 6.61891 4.39267 0.211355 1.92164

CAGE analysis